The 2.0 version of rSNPBase

Variant report

Variant rs2180075
Chromosome Location chr1:184544842-184544843
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:184521000-184547400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr1:184525000-184546000 Weak transcription Brain Angular Gyrus brain
3 chr1:184525600-184545600 Weak transcription Fetal Muscle Trunk muscle
4 chr1:184532400-184545800 Weak transcription Rectal Smooth Muscle rectum
5 chr1:184532600-184545600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr1:184533200-184547400 Weak transcription Colon Smooth Muscle Colon
7 chr1:184536000-184545600 Weak transcription Left Ventricle heart
8 chr1:184536000-184559000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:184536000-184559000 Weak transcription NHEK skin
10 chr1:184536200-184549200 Weak transcription NHDF-Ad bronchial
11 chr1:184536600-184545600 Weak transcription Stomach Smooth Muscle stomach
12 chr1:184536800-184545000 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr1:184536800-184559200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr1:184537200-184545800 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr1:184537200-184559000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:184538000-184559400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:184538400-184558000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:184538400-184558000 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:184538400-184559000 Weak transcription Right Atrium heart
20 chr1:184538600-184549000 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:184538800-184548600 Weak transcription Fetal Intestine Small intestine
22 chr1:184539000-184545600 Weak transcription Duodenum Mucosa Duodenum
23 chr1:184543000-184545800 Weak transcription Fetal Stomach stomach
24 chr1:184543600-184546200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr1:184544000-184545000 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr1:184544000-184546600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:184544200-184545000 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:184544200-184545600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr1:184544200-184545600 Weak transcription Fetal Muscle Leg muscle
30 chr1:184544200-184545600 Weak transcription Psoas Muscle Psoas
31 chr1:184544200-184545800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr1:184544200-184545800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:184544200-184546600 Enhancers Brain Anterior Caudate brain
34 chr1:184544200-184551200 Weak transcription Small Intestine intestine
35 chr1:184544400-184545200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
36 chr1:184544400-184545800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:184544400-184545800 Weak transcription Brain Cingulate Gyrus brain
38 chr1:184544400-184552800 Weak transcription H1 Cell Line embryonic stem cell
39 chr1:184544600-184545800 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr1:184544600-184545800 Weak transcription Brain Substantia Nigra brain
41 chr1:184544600-184547400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr1:184544600-184552400 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015