The 2.0 version of rSNPBase

Variant report

Variant rs12754494
Chromosome Location chr1:184589718-184589719
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:184557200-184591600 Weak transcription Aorta Aorta
2 chr1:184560600-184591000 Weak transcription Fetal Intestine Small intestine
3 chr1:184567200-184590200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:184571600-184591200 Weak transcription Fetal Intestine Large intestine
5 chr1:184573600-184598800 Weak transcription H1 Cell Line embryonic stem cell
6 chr1:184578200-184591400 Weak transcription Lung lung
7 chr1:184578600-184598800 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr1:184580600-184591000 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr1:184580600-184591400 Weak transcription Fetal Muscle Trunk muscle
10 chr1:184580800-184590200 Weak transcription Right Atrium heart
11 chr1:184580800-184590400 Weak transcription Brain Cingulate Gyrus brain
12 chr1:184580800-184590600 Weak transcription Adipose Nuclei Adipose
13 chr1:184580800-184591400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:184580800-184605000 Weak transcription Fetal Brain Female brain
15 chr1:184581000-184590600 Weak transcription Fetal Heart heart
16 chr1:184581000-184590800 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:184581000-184590800 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr1:184581000-184590800 Weak transcription Rectal Smooth Muscle rectum
19 chr1:184581000-184598800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:184581000-184602200 Weak transcription Brain Germinal Matrix brain
21 chr1:184581400-184591200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr1:184581400-184591400 Weak transcription HMEC breast
23 chr1:184582000-184590200 Weak transcription NHEK skin
24 chr1:184584600-184590600 Weak transcription Brain Hippocampus Middle brain
25 chr1:184584800-184590000 Weak transcription Left Ventricle heart
26 chr1:184584800-184590200 Weak transcription Brain Angular Gyrus brain
27 chr1:184584800-184591400 Weak transcription Spleen Spleen
28 chr1:184585000-184599600 Weak transcription Primary hematopoietic stem cells blood
29 chr1:184585200-184597600 Weak transcription Fetal Brain Male brain
30 chr1:184585200-184611600 Weak transcription Primary hematopoietic stem cells short term culture blood
31 chr1:184586000-184590000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:184586800-184590800 Weak transcription Right Ventricle heart
33 chr1:184586800-184593600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr1:184587000-184591200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:184587800-184590800 Strong transcription Cortex derived primary cultured neurospheres brain
36 chr1:184588000-184589800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr1:184588400-184589800 Strong transcription Breast Myoepithelial Primary Cells Breast
38 chr1:184588400-184590200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:184588400-184592000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
40 chr1:184588600-184589800 Strong transcription Sigmoid Colon Sigmoid Colon
41 chr1:184588600-184592200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:184588800-184589800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr1:184588800-184592000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr1:184589000-184589800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:184589000-184591000 Enhancers Fetal Lung lung
46 chr1:184589000-184592200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr1:184589000-184592400 Enhancers Fetal Muscle Leg muscle
48 chr1:184589200-184589800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:184589200-184589800 Weak transcription Liver Liver
50 chr1:184589200-184591000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015