Variant report

Variant	rs6659745
Chromosome Location	chr1:227740847-227740848
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10047205	0.84[EUR][1000 genomes]
rs10916178	0.85[EUR][1000 genomes]
rs10916192	0.84[EUR][1000 genomes]
rs12059899	0.85[EUR][1000 genomes]
rs12069550	0.87[EUR][1000 genomes]
rs12070539	0.85[EUR][1000 genomes]
rs12080590	0.88[EUR][1000 genomes]
rs12082414	0.87[EUR][1000 genomes]
rs12092295	0.84[EUR][1000 genomes]
rs12095502	0.85[EUR][1000 genomes]
rs12096675	0.84[EUR][1000 genomes]
rs1495846	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1495849	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16847966	0.87[EUR][1000 genomes]
rs16847991	0.87[EUR][1000 genomes]
rs16847992	0.87[EUR][1000 genomes]
rs16848029	0.84[EUR][1000 genomes]
rs1923821	0.85[EUR][1000 genomes]
rs2012432	0.85[EUR][1000 genomes]
rs2132366	0.87[EUR][1000 genomes]
rs2256599	0.88[EUR][1000 genomes]
rs2453682	0.88[EUR][1000 genomes]
rs2644143	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2644144	0.89[EUR][1000 genomes]
rs2644146	0.91[EUR][1000 genomes]
rs2644153	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2644161	0.87[EUR][1000 genomes]
rs2814059	0.89[EUR][1000 genomes]
rs2814060	0.89[EUR][1000 genomes]
rs2814061	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814084	0.89[EUR][1000 genomes]
rs2814085	0.88[EUR][1000 genomes]
rs2819496	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2819498	0.89[EUR][1000 genomes]
rs2819507	0.88[EUR][1000 genomes]
rs2819511	0.88[EUR][1000 genomes]
rs3748806	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4376731	0.85[EUR][1000 genomes]
rs4589104	0.85[EUR][1000 genomes]
rs58020705	0.84[EUR][1000 genomes]
rs59034043	0.87[EUR][1000 genomes]
rs59149651	0.82[EUR][1000 genomes]
rs59753688	0.87[EUR][1000 genomes]
rs66471275	0.85[EUR][1000 genomes]
rs66491073	0.87[EUR][1000 genomes]
rs66736638	0.87[EUR][1000 genomes]
rs6688145	0.87[EUR][1000 genomes]
rs6693348	0.87[EUR][1000 genomes]
rs66938123	0.85[EUR][1000 genomes]
rs67511833	0.84[EUR][1000 genomes]
rs67676707	0.87[EUR][1000 genomes]
rs68046179	0.81[EUR][1000 genomes]
rs68186506	0.85[EUR][1000 genomes]
rs72632830	0.88[EUR][1000 genomes]
rs72632831	0.91[EUR][1000 genomes]
rs72632832	0.86[EUR][1000 genomes]
rs72748074	0.87[EUR][1000 genomes]
rs7413796	0.91[EUR][1000 genomes]
rs753541	0.85[EUR][1000 genomes]
rs7539151	0.84[EUR][1000 genomes]
rs903692	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs903693	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs903694	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs903695	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs965942	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv2753828	chr1:227670265-227791265	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv873246	chr1:227694948-227884465	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007479	chr1:227695868-227984466	Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv873248	chr1:227710381-227786033	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv947520	chr1:227724042-227750192	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv947560	chr1:227726600-227750192	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv3338615	chr1:227738421-227798486	Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6659745	C1orf142	Cis_1M	lymphoblastoid	RTeQTL
rs6659745	ZNF678	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227731000-227748400	Weak transcription	Right Atrium	heart

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