The 2.0 version of rSNPBase

Variant report

Variant rs12080590
Chromosome Location chr1:227759771-227759772
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227752000-227759800 Weak transcription Left Ventricle heart
2 chr1:227752000-227760000 Weak transcription Esophagus oesophagus
3 chr1:227752000-227766800 Weak transcription Ovary ovary
4 chr1:227752200-227760000 Weak transcription Fetal Intestine Large intestine
5 chr1:227752200-227763200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:227752200-227774400 Weak transcription Aorta Aorta
7 chr1:227752400-227759800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:227752400-227759800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:227752400-227759800 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr1:227752400-227760000 Weak transcription Fetal Kidney kidney
11 chr1:227752400-227760000 Weak transcription Fetal Muscle Leg muscle
12 chr1:227752400-227760000 Weak transcription NHEK skin
13 chr1:227752400-227760200 Weak transcription Fetal Heart heart
14 chr1:227752400-227760200 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:227752400-227763000 Weak transcription Stomach Mucosa stomach
16 chr1:227752400-227763800 Weak transcription HSMMtube muscle
17 chr1:227752400-227766800 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr1:227752400-227780600 Weak transcription Rectal Smooth Muscle rectum
19 chr1:227752600-227759800 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:227752600-227760000 Weak transcription Primary B cells from peripheral blood blood
21 chr1:227752600-227760000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:227752600-227760000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:227753200-227760000 Weak transcription Small Intestine intestine
24 chr1:227753600-227763000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr1:227754000-227759800 Weak transcription Primary T helper cells fromperipheralblood blood
26 chr1:227754200-227760000 Weak transcription Thymus Thymus
27 chr1:227754400-227759800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr1:227754400-227760000 Weak transcription Fetal Stomach stomach
29 chr1:227754400-227783600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr1:227755800-227760000 Weak transcription HSMM muscle
31 chr1:227756800-227759800 Weak transcription K562 blood
32 chr1:227756800-227760000 Weak transcription Right Ventricle heart
33 chr1:227756800-227760000 Weak transcription Spleen Spleen
34 chr1:227756800-227760200 Weak transcription Psoas Muscle Psoas
35 chr1:227756800-227760400 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr1:227756800-227762400 Weak transcription Primary T cells fromperipheralblood blood
37 chr1:227757000-227760000 Weak transcription Gastric stomach
38 chr1:227758000-227760000 Weak transcription Pancreas Pancrea
39 chr1:227758200-227759800 Weak transcription Fetal Lung lung
40 chr1:227758400-227760000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:227758400-227761400 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr1:227758600-227759800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
43 chr1:227759400-227761000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
44 chr1:227759600-227760400 ZNF genes & repeats Primary T cells from cord blood blood

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Last update: Aug 31, 2015