The 2.0 version of rSNPBase

Variant report

Variant rs6661082
Chromosome Location chr1:63252373-63252374
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63249000-63252600 Active TSS Brain Inferior Temporal Lobe brain
2 chr1:63250400-63254000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:63250600-63252600 Weak transcription Pancreas Pancrea
4 chr1:63250600-63262400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:63250600-63266600 Weak transcription Gastric stomach
6 chr1:63250800-63252600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
7 chr1:63250800-63252600 Enhancers Primary T killer naive cells fromperipheralblood blood
8 chr1:63250800-63253200 Active TSS Brain Angular Gyrus brain
9 chr1:63250800-63319000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:63251000-63252400 Enhancers Primary T helper naive cells fromperipheralblood blood
11 chr1:63251000-63252400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
12 chr1:63251000-63252800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:63251000-63259600 Weak transcription Stomach Mucosa stomach
14 chr1:63251000-63266600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr1:63251000-63269600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:63251000-63272600 Weak transcription Fetal Muscle Leg muscle
17 chr1:63251000-63274800 Weak transcription Fetal Intestine Small intestine
18 chr1:63251000-63296000 Weak transcription Fetal Thymus thymus
19 chr1:63251000-63317800 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr1:63251000-63327400 Weak transcription Fetal Stomach stomach
21 chr1:63251200-63252800 Enhancers HepG2 liver
22 chr1:63251200-63260200 Weak transcription Primary hematopoietic stem cells blood
23 chr1:63251200-63327400 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr1:63251400-63252400 Weak transcription Primary T cells from cord blood blood
25 chr1:63251400-63252800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr1:63251400-63252800 Enhancers Dnd41 blood
27 chr1:63251400-63257200 Weak transcription Monocytes-CD14+_RO01746 blood
28 chr1:63251400-63259000 Weak transcription Primary B cells from peripheral blood blood
29 chr1:63251400-63261200 Weak transcription Primary monocytes fromperipheralblood blood
30 chr1:63251400-63264800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr1:63251400-63275600 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr1:63251800-63260800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr1:63251800-63273000 Weak transcription iPS-18 Cell Line embryonic stem cell
34 chr1:63252000-63252400 Weak transcription Primary B cells from cord blood blood
35 chr1:63252000-63252400 Enhancers Brain Anterior Caudate brain
36 chr1:63252000-63252400 Flanking Active TSS Brain Cingulate Gyrus brain
37 chr1:63252000-63252400 Weak transcription Thymus Thymus
38 chr1:63252000-63252400 Active TSS GM12878-XiMat blood
39 chr1:63252000-63252800 Enhancers K562 blood
40 chr1:63252000-63266600 Weak transcription Colon Smooth Muscle Colon
41 chr1:63252000-63269600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:63252000-63284400 Weak transcription Primary T helper cells fromperipheralblood blood
43 chr1:63252200-63252400 Active TSS Brain Hippocampus Middle brain
44 chr1:63252200-63252600 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr1:63252200-63252800 Flanking Active TSS Brain Substantia Nigra brain
46 chr1:63252200-63258400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015