Variant report

Variant	rs6661772
Chromosome Location	chr1:186919863-186919864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:186911005..186913664-chr1:186917899..186920016,2	K562	blood:
2	chr1:186917685..186920424-chr1:186928901..186931796,2	K562	blood:
3	chr1:186911265..186913664-chr1:186917899..186920017,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1124429	0.87[AMR][1000 genomes]
rs12720530	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12720684	0.82[AMR][1000 genomes]
rs12720702	0.87[AMR][1000 genomes]
rs12720704	0.87[AMR][1000 genomes]
rs12720707	0.87[AMR][1000 genomes]
rs12720717	0.87[AMR][1000 genomes]
rs2307195	1.00[AFR][1000 genomes]
rs2891264	0.87[AMR][1000 genomes]
rs55819273	1.00[AFR][1000 genomes]
rs59300656	0.83[EUR][1000 genomes]
rs61208933	0.83[EUR][1000 genomes]
rs6675166	0.83[EUR][1000 genomes]
rs6675898	0.83[EUR][1000 genomes]
rs6678709	0.83[EUR][1000 genomes]
rs72709847	0.86[AMR][1000 genomes]
rs72709853	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72709867	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72714329	0.87[AMR][1000 genomes]
rs7511652	0.83[AMR][1000 genomes]
rs7522159	0.87[AMR][1000 genomes]
rs7544719	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv548407	chr1:186875459-186951429	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186881800-186933600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:186881800-186951200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:186890000-186924400	Weak transcription	Fetal Stomach	stomach
4	chr1:186890800-186928400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr1:186892800-186924000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr1:186895400-186937000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:186897600-186920800	Weak transcription	Fetal Intestine Small	intestine
8	chr1:186900000-186935800	Weak transcription	NHDF-Ad	bronchial
9	chr1:186904000-186925200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:186906600-186920800	Weak transcription	Fetal Intestine Large	intestine
11	chr1:186908000-186933800	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:186909800-186922600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:186909800-186932600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:186910000-186920000	Weak transcription	Adipose Nuclei	Adipose
15	chr1:186912400-186934600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr1:186915600-186923200	Strong transcription	Primary hematopoietic stem cells	blood
17	chr1:186916000-186920200	Strong transcription	Hela-S3	cervix
18	chr1:186917000-186929000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr1:186917400-186934800	Weak transcription	Colonic Mucosa	Colon
20	chr1:186917600-186922600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:186918000-186921000	Weak transcription	Left Ventricle	heart
22	chr1:186918200-186920000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr1:186919000-186920000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:186919000-186920200	Enhancers	HMEC	breast
25	chr1:186919000-186921200	Enhancers	HUVEC	blood vessel
26	chr1:186919000-186923000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:186919000-186937000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr1:186919200-186920400	Enhancers	NHEK	skin
29	chr1:186919200-186923200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr1:186919400-186920200	Enhancers	NH-A	brain
31	chr1:186919400-186925400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr1:186919600-186944800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:186919800-186920000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:186919800-186920000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:186919800-186920000	Enhancers	Osteobl	bone
36	chr1:186919800-186920200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:186919800-186920400	Genic enhancers	A549	lung
38	chr1:186919800-186924000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:186919800-186928600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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