Variant report

Variant	rs7522159
Chromosome Location	chr1:186964106-186964107
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1124429	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12720684	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12720702	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12720704	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12720707	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12720717	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2383556	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2891264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4651345	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55834900	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6661772	0.87[AMR][1000 genomes]
rs72709867	0.82[AMR][1000 genomes]
rs72714329	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7511652	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7544719	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186949800-186970000	Weak transcription	Hela-S3	cervix
2	chr1:186952000-186969800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:186953200-186970800	Weak transcription	Adipose Nuclei	Adipose
4	chr1:186953600-186969800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:186959400-186967400	Weak transcription	HUVEC	blood vessel
6	chr1:186959600-186970000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:186959600-186970200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:186963200-186964800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:186963200-186968200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:186963400-186964600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:186963800-186964400	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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