Variant report

Variant	rs66634733
Chromosome Location	chr10:96404032-96404033
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1042192	0.80[AMR][1000 genomes]
rs1042194	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12569873	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12570771	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12570829	0.87[AMR][1000 genomes]
rs12571421	0.83[ASN][1000 genomes]
rs12571533	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12572499	0.86[ASN][1000 genomes]
rs12572917	0.83[ASN][1000 genomes]
rs12762136	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12762370	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12769205	0.83[ASN][1000 genomes]
rs12770901	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12773527	0.82[AMR][1000 genomes]
rs12773884	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12774450	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12775423	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12777311	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12777823	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12778026	0.83[ASN][1000 genomes]
rs12778216	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12781477	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12782132	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12783509	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12783988	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12784219	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12784245	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12785038	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1326832	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1926712	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2281890	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2296680	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2860837	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2860838	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34582766	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34777815	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34829812	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35037138	0.80[AMR][1000 genomes]
rs35172334	0.86[ASN][1000 genomes]
rs35390752	0.83[ASN][1000 genomes]
rs35751085	0.83[ASN][1000 genomes]
rs3818504	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4244285	0.83[ASN][1000 genomes]
rs4255471	0.80[AMR][1000 genomes]
rs4532967	0.86[ASN][1000 genomes]
rs4986894	0.85[ASN][1000 genomes]
rs58335703	0.86[ASN][1000 genomes]
rs58447435	0.83[ASN][1000 genomes]
rs6583954	0.83[ASN][1000 genomes]
rs67941743	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7085420	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7085890	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7089349	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7100783	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs71482318	0.83[ASN][1000 genomes]
rs717238	0.91[ASN][1000 genomes]
rs72816638	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72816654	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7475739	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs749745	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7893282	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7900135	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7904581	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7906139	0.87[ASN][1000 genomes]
rs7907226	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7919524	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs932809	0.85[ASN][1000 genomes]
rs9783239	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs66634733	CYP2C19	cis	Esophagus Mucosa	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96400400-96407200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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