Variant report
| Variant | rs7906139 |
|---|---|
| Chromosome Location | chr10:96396607-96396608 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs12569873 | 0.82[ASN][1000 genomes] |
| rs12570771 | 0.82[ASN][1000 genomes] |
| rs12762136 | 0.81[ASN][1000 genomes] |
| rs12770901 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12773527 | 0.86[ASN][1000 genomes] |
| rs12773884 | 0.87[ASN][1000 genomes] |
| rs12774450 | 0.88[ASN][1000 genomes] |
| rs12775423 | 0.88[ASN][1000 genomes] |
| rs12777311 | 0.82[ASN][1000 genomes] |
| rs12777823 | 0.88[ASN][1000 genomes] |
| rs12778216 | 0.82[ASN][1000 genomes] |
| rs12781477 | 0.81[ASN][1000 genomes] |
| rs12782132 | 0.88[ASN][1000 genomes] |
| rs12783509 | 0.81[ASN][1000 genomes] |
| rs12783988 | 0.81[ASN][1000 genomes] |
| rs12784219 | 0.81[ASN][1000 genomes] |
| rs12784245 | 0.89[ASN][1000 genomes] |
| rs1926712 | 0.81[ASN][1000 genomes] |
| rs2296680 | 0.81[ASN][1000 genomes] |
| rs2860837 | 0.83[ASN][1000 genomes] |
| rs2860838 | 0.82[ASN][1000 genomes] |
| rs34582766 | 0.88[ASN][1000 genomes] |
| rs34829812 | 0.81[ASN][1000 genomes] |
| rs4255471 | 0.86[ASN][1000 genomes] |
| rs66634733 | 0.87[ASN][1000 genomes] |
| rs67941743 | 0.88[ASN][1000 genomes] |
| rs7085420 | 0.86[ASN][1000 genomes] |
| rs7085890 | 0.81[ASN][1000 genomes] |
| rs7089349 | 0.88[ASN][1000 genomes] |
| rs7100783 | 0.81[ASN][1000 genomes] |
| rs717238 | 0.84[ASN][1000 genomes] |
| rs72816638 | 0.83[ASN][1000 genomes] |
| rs749745 | 0.88[ASN][1000 genomes] |
| rs7893282 | 0.81[ASN][1000 genomes] |
| rs7900135 | 0.81[ASN][1000 genomes] |
| rs7907226 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv497859 | chr10:96058024-97027747 | Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:96386800-96397800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr10:96393800-96403400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
