Variant report

Variant	rs6664652
Chromosome Location	chr1:47711714-47711715
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47705490..47714722-chr1:47717231..47723503,17	K562	blood:
2	chr1:47710711..47713043-chr1:47798786..47800881,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162368	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10789505	0.84[ASN][1000 genomes]
rs10890473	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11211486	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11589932	0.86[ASN][1000 genomes]
rs12029934	0.89[ASN][1000 genomes]
rs12032890	0.83[ASN][1000 genomes]
rs2758736	0.89[AFR][1000 genomes]
rs2758737	0.96[AFR][1000 genomes]
rs6588124	0.81[ASN][1000 genomes]
rs6658496	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682899	0.89[ASN][1000 genomes]
rs6692691	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7552123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7554050	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood
3	chr1:47705800-47714800	Weak transcription	Fetal Thymus	thymus
4	chr1:47707600-47716600	Weak transcription	Hela-S3	cervix
5	chr1:47707600-47722800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:47708000-47715200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:47709800-47714600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:47709800-47716000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:47709800-47725400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:47709800-47726000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:47709800-47745000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:47710000-47716400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:47710000-47716600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:47710000-47716600	Weak transcription	HUVEC	blood vessel
15	chr1:47710400-47716600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:47711000-47715200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:47711000-47727800	Weak transcription	A549	lung
18	chr1:47711200-47715600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:47711200-47716600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:47711400-47713400	Weak transcription	K562	blood
21	chr1:47711400-47716200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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