Variant report

Variant	rs6665163
Chromosome Location	chr1:211023109-211023110
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61829484	1.00[AFR][1000 genomes]
rs61848963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61848969	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61848971	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61851019	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211016400-211024200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:211016600-211023400	Weak transcription	Brain Anterior Caudate	brain
3	chr1:211022000-211024200	Weak transcription	HSMM	muscle
4	chr1:211022600-211024400	Enhancers	Brain Hippocampus Middle	brain
5	chr1:211022600-211027200	Enhancers	Brain Substantia Nigra	brain
6	chr1:211023000-211024400	Enhancers	Brain Cingulate Gyrus	brain
7	chr1:211023000-211027000	Enhancers	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links