Variant report
| Variant | rs66671338 |
|---|---|
| Chromosome Location | chr12:74829866-74829867 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1019690 | 0.81[ASN][1000 genomes] |
| rs1019692 | 0.81[ASN][1000 genomes] |
| rs1019693 | 0.81[ASN][1000 genomes] |
| rs1019694 | 0.81[ASN][1000 genomes] |
| rs10879749 | 0.81[ASN][1000 genomes] |
| rs10879759 | 0.87[ASN][1000 genomes] |
| rs10879779 | 0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11180015 | 0.81[ASN][1000 genomes] |
| rs11180049 | 0.87[ASN][1000 genomes] |
| rs11180057 | 0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11180063 | 0.80[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11608849 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11829422 | 0.87[ASN][1000 genomes] |
| rs1346248 | 0.81[ASN][1000 genomes] |
| rs1365533 | 0.81[ASN][1000 genomes] |
| rs1365534 | 0.81[ASN][1000 genomes] |
| rs1471296 | 0.80[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17113335 | 0.81[ASN][1000 genomes] |
| rs1824540 | 0.88[ASN][1000 genomes] |
| rs2012003 | 0.81[ASN][1000 genomes] |
| rs2012005 | 0.81[ASN][1000 genomes] |
| rs2162395 | 0.81[ASN][1000 genomes] |
| rs2169290 | 0.96[ASN][1000 genomes] |
| rs66472931 | 0.81[ASN][1000 genomes] |
| rs66512760 | 0.81[ASN][1000 genomes] |
| rs66756307 | 0.81[ASN][1000 genomes] |
| rs67249120 | 0.81[ASN][1000 genomes] |
| rs67436776 | 0.96[ASN][1000 genomes] |
| rs67452475 | 0.87[ASN][1000 genomes] |
| rs67619450 | 0.81[ASN][1000 genomes] |
| rs67773463 | 0.81[ASN][1000 genomes] |
| rs68026423 | 0.81[ASN][1000 genomes] |
| rs68173977 | 0.81[ASN][1000 genomes] |
| rs72652864 | 0.81[ASN][1000 genomes] |
| rs72652865 | 0.81[ASN][1000 genomes] |
| rs7299438 | 0.87[ASN][1000 genomes] |
| rs965780 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039468 | chr12:74080586-75000246 | Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv428595 | chr12:74679884-74858160 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1052996 | chr12:74710909-74891621 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv541540 | chr12:74710909-74891621 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv559413 | chr12:74754590-74924819 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:74829600-74831600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
