Variant report

Variant	rs965780
Chromosome Location	chr12:74829902-74829903
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1019690	0.81[ASN][1000 genomes]
rs1019692	0.81[ASN][1000 genomes]
rs1019693	0.81[ASN][1000 genomes]
rs1019694	0.81[ASN][1000 genomes]
rs10785117	0.84[AFR][1000 genomes]
rs10879749	0.81[ASN][1000 genomes]
rs10879759	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10879779	0.93[ASN][1000 genomes]
rs11180015	0.81[ASN][1000 genomes]
rs11180049	0.87[ASN][1000 genomes]
rs11180057	0.96[ASN][1000 genomes]
rs11180063	0.96[ASN][1000 genomes]
rs11608849	0.93[ASN][1000 genomes]
rs11829422	0.87[ASN][1000 genomes]
rs1346248	0.81[ASN][1000 genomes]
rs1365533	0.81[ASN][1000 genomes]
rs1365534	0.81[ASN][1000 genomes]
rs1471296	0.96[ASN][1000 genomes]
rs17113335	0.81[ASN][1000 genomes]
rs1820497	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1824540	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1824541	0.92[AFR][1000 genomes]
rs2012003	0.81[ASN][1000 genomes]
rs2012005	0.81[ASN][1000 genomes]
rs2162395	0.81[ASN][1000 genomes]
rs2169290	0.96[ASN][1000 genomes]
rs2278189	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs66472931	0.81[ASN][1000 genomes]
rs66512760	0.81[ASN][1000 genomes]
rs66671338	1.00[ASN][1000 genomes]
rs66756307	0.81[ASN][1000 genomes]
rs67249120	0.81[ASN][1000 genomes]
rs67436776	0.96[ASN][1000 genomes]
rs67452475	0.87[ASN][1000 genomes]
rs67619450	0.81[ASN][1000 genomes]
rs67773463	0.81[ASN][1000 genomes]
rs68026423	0.81[ASN][1000 genomes]
rs68173977	0.81[ASN][1000 genomes]
rs72652864	0.81[ASN][1000 genomes]
rs72652865	0.81[ASN][1000 genomes]
rs7299438	0.87[ASN][1000 genomes]
rs7974001	0.81[AFR][1000 genomes]
rs980784	0.88[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039468	chr12:74080586-75000246	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv428595	chr12:74679884-74858160	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1052996	chr12:74710909-74891621	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv541540	chr12:74710909-74891621	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv559413	chr12:74754590-74924819	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:74829600-74831600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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