Variant report

Variant rs6667194
Chromosome Location chr1:162115178-162115179
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:162107200-162115200 Weak transcription Fetal Intestine Small intestine
2 chr1:162107200-162115400 Weak transcription Stomach Mucosa stomach
3 chr1:162107200-162124200 Weak transcription Aorta Aorta
4 chr1:162107400-162115200 Weak transcription Lung lung
5 chr1:162109400-162115400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:162111200-162119600 Enhancers Breast Myoepithelial Primary Cells Breast
7 chr1:162111400-162116400 Enhancers ES-WA7 Cell Line embryonic stem cell
8 chr1:162111400-162117800 Weak transcription Pancreas Pancrea
9 chr1:162112400-162115200 Enhancers ES-I3 Cell Line embryonic stem cell
10 chr1:162112600-162118200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:162112600-162121800 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr1:162112800-162115200 Enhancers HUES48 Cell Line embryonic stem cell
13 chr1:162112800-162119200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr1:162113000-162115200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr1:162113400-162119200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
16 chr1:162113600-162115200 Weak transcription HSMMtube muscle
17 chr1:162113600-162116600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr1:162113800-162115200 Enhancers H1 Cell Line embryonic stem cell
19 chr1:162113800-162115200 Enhancers iPS-15b Cell Line embryonic stem cell
20 chr1:162113800-162115800 Enhancers Duodenum Mucosa Duodenum
21 chr1:162113800-162116400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr1:162114000-162116200 Enhancers Liver Liver
23 chr1:162114200-162115200 Enhancers Brain Hippocampus Middle brain
24 chr1:162114200-162115200 Enhancers Brain Substantia Nigra brain
25 chr1:162114200-162115600 Weak transcription Hela-S3 cervix
26 chr1:162114200-162115800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
27 chr1:162114200-162116200 Enhancers Brain Angular Gyrus brain
28 chr1:162114200-162116400 Enhancers H9 Cell Line embryonic stem cell
29 chr1:162114200-162116400 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
30 chr1:162114400-162115200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr1:162114400-162116000 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:162114400-162116000 Flanking Active TSS Cortex derived primary cultured neurospheres brain
33 chr1:162114400-162116400 Enhancers Fetal Brain Male brain
34 chr1:162114400-162116600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:162114400-162116600 Enhancers Fetal Adrenal Gland Adrenal Gland
36 chr1:162114400-162117000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:162114600-162115200 Enhancers Brain Cingulate Gyrus brain
38 chr1:162114600-162115200 Bivalent Enhancer Fetal Muscle Leg muscle
39 chr1:162114600-162116000 Flanking Active TSS HUES6 Cell Line embryonic stem cell
40 chr1:162114600-162116000 Flanking Active TSS HepG2 liver
41 chr1:162114600-162116200 Enhancers Fetal Brain Female brain
42 chr1:162114600-162116200 Enhancers Fetal Kidney kidney
43 chr1:162114600-162116400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
44 chr1:162114600-162116600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr1:162114800-162115200 Enhancers iPS-18 Cell Line embryonic stem cell
46 chr1:162114800-162115200 Active TSS iPS-20b Cell Line embryonic stem cell
47 chr1:162114800-162115200 Weak transcription Brain Anterior Caudate brain
48 chr1:162114800-162115200 Active TSS Brain Inferior Temporal Lobe brain
49 chr1:162114800-162116000 Flanking Active TSS HUES64 Cell Line embryonic stem cell
50 chr1:162114800-162116400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell

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