Variant report

Variant	rs66680673
Chromosome Location	chr6:142620799-142620800
allele	-/AAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:142616393..142621187-chr6:142621251..142624872,10	MCF-7	breast:
2	chr6:142616863..142618821-chr6:142620050..142622053,2	K562	blood:
3	chr6:142619918..142621591-chr6:142650811..142653503,2	MCF-7	breast:
4	chr6:142619429..142621317-chr6:142736367..142738692,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112414	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1029666	chr6:142594099-142643084	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv275340	chr6:142620405-142624568	Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142616400-142621800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:142618200-142621800	Enhancers	HMEC	breast
3	chr6:142618400-142621600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:142618400-142621600	Enhancers	NHEK	skin
5	chr6:142618600-142621800	Weak transcription	Stomach Mucosa	stomach
6	chr6:142618800-142621800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:142618800-142622000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:142619200-142622200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:142619400-142621800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:142619400-142622000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:142619400-142622000	Enhancers	Placenta	Placenta
12	chr6:142619600-142620800	Enhancers	A549	lung
13	chr6:142619600-142621400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:142619600-142621600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:142619600-142621600	Weak transcription	Fetal Lung	lung
16	chr6:142619600-142622200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:142619600-142622200	Weak transcription	NHDF-Ad	bronchial
18	chr6:142619800-142621600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:142619800-142621800	Weak transcription	Fetal Heart	heart
20	chr6:142619800-142622000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:142619800-142622000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:142619800-142622000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:142619800-142622000	Weak transcription	NH-A	brain
24	chr6:142620000-142621800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:142620000-142621800	Weak transcription	Osteobl	bone
26	chr6:142620000-142622000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:142620000-142622200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:142620400-142621400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:142620400-142621400	Weak transcription	HUVEC	blood vessel
30	chr6:142620400-142621600	Enhancers	HepG2	liver
31	chr6:142620400-142621800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:142620400-142621800	Weak transcription	NHLF	lung
33	chr6:142620400-142622000	Weak transcription	HSMMtube	muscle
34	chr6:142620400-142622200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:142620600-142621800	Weak transcription	HSMM	muscle
36	chr6:142620600-142622200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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