Variant report

Variant	rs6672183
Chromosome Location	chr1:210679612-210679613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10735507	0.96[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs11119520	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119521	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11119522	0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11119523	0.82[ASN][1000 genomes]
rs12121566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540601	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210674400-210719600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210677800-210680400	Enhancers	Fetal Heart	heart
3	chr1:210677800-210680600	Enhancers	HSMMtube	muscle
4	chr1:210678400-210680600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:210678600-210680000	Enhancers	Fetal Brain Male	brain
6	chr1:210678600-210680400	Enhancers	Fetal Brain Female	brain
7	chr1:210678800-210679800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:210678800-210679800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:210678800-210679800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:210678800-210680000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:210678800-210680000	Enhancers	HSMM	muscle
12	chr1:210678800-210680600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:210679000-210680000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr1:210679600-210679800	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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