Variant report

Variant	rs6673291
Chromosome Location	chr1:246580718-246580719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr1:246580676-246581111	SK-N-SH	brain:	n/a	n/a
2	NR2F2	chr1:246580626-246581348	MCF-7	breast:	n/a	n/a
3	EP300	chr1:246580587-246581237	SK-N-SH	brain:	n/a	n/a
4	GATA3	chr1:246580595-246581407	MCF-7	breast:	n/a	n/a
5	KAP1	chr1:246580655-246581130	U2OS	brain:	n/a	n/a
6	GATA3	chr1:246580573-246581440	MCF-7	breast:	n/a	n/a
7	MAFK	chr1:246580697-246580998	IMR90	lung:	n/a	n/a
8	SETDB1	chr1:246580323-246580948	U2OS	brain:	n/a	n/a
9	GATA2	chr1:246580671-246581182	HUVEC	blood vessel:	n/a	chr1:246580974-246580988
10	TCF12	chr1:246580545-246581154	SK-N-SH	brain:	n/a	n/a
11	GATA3	chr1:246580510-246581387	SK-N-SH	brain:	n/a	n/a
12	POLR2A	chr1:246580482-246580971	U87	brain:	n/a	n/a
13	POLR2A	chr1:246580482-246580841	U87	brain:	n/a	n/a
14	KAP1	chr1:246580521-246580871	K562	blood:	n/a	n/a
15	GATA3	chr1:246580451-246581456	SK-N-SH	brain:	n/a	n/a
16	PBX3	chr1:246580627-246581135	SK-N-SH	brain:	n/a	n/a
17	FOSL2	chr1:246580599-246581097	SK-N-SH	brain:	n/a	n/a
18	CBX3	chr1:246580386-246580871	K562	blood:	n/a	n/a
19	GATA3	chr1:246580588-246581191	MCF-7	breast:	n/a	n/a
20	TCF12	chr1:246580529-246581255	SK-N-SH	brain:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:246580717-246580767	HIPEpiC	eye:	n/a
2	chr1:246580717-246580767	RPTEC	kidney:	n/a
3	chr1:246580717-246580767	AG04450	lung:	fetal
4	chr1:246580717-246580767	H1-hESC	embryonic stem cell:	embryo
5	chr1:246580717-246580767	SK-N-SH_RA	brain:	n/a
6	chr1:246580717-246580767	HRCEpiC	kidney:	n/a
7	chr1:246580717-246580767	K562	blood:	n/a
8	chr1:246580717-246580767	ovcar-3	ovarian:	n/a
9	chr1:246580717-246580767	HepG2	liver:	n/a
10	chr1:246580717-246580767	HNPCEpiC	eye:	n/a
11	chr1:246580717-246580767	HEEpiC	esophagus:	n/a
12	chr1:246580717-246580767	HCT-116	colon:	n/a
13	chr1:246580717-246580767	PrEC	prostate:	n/a
14	chr1:246580717-246580767	CMK	blood:	n/a
15	chr1:246580717-246580767	GM19239	blood:	n/a
16	chr1:246580717-246580767	HCM	heart:	n/a
17	chr1:246580717-246580767	BE2_C	brain:	n/a
18	chr1:246580717-246580767	A549	lung:	n/a
19	chr1:246580717-246580767	HMEC	breast:	n/a
20	chr1:246580717-246580767	AG09319	gingival:	n/a
21	chr1:246580717-246580767	HPAEpiC	pulmonary alveolar:	n/a
22	chr1:246580717-246580767	ECC-1	luminal epithelium:	n/a
23	chr1:246580717-246580767	T-47D	breast:	n/a
24	chr1:246580717-246580767	HCF	heart:	n/a
25	chr1:246580717-246580767	Hela-S3	cervix:	n/a
26	chr1:246580717-246580767	HRPEpiC	eye:	n/a
27	chr1:246580717-246580767	LNCaP	prostate:	n/a
28	chr1:246580717-246580767	HAEpiC	amniotic membrane:	n/a
29	chr1:246580717-246580767	GM06990	blood:	n/a
30	chr1:246580717-246580767	NH-A	brain:	n/a
31	chr1:246580717-246580767	SK-N-SH	brain:	n/a
32	chr1:246580717-246580767	HL-60	blood:	n/a
33	chr1:246580717-246580767	U87	brain:	n/a
34	chr1:246580717-246580767	SK-N-MC	brain:	n/a
35	chr1:246580717-246580767	AG09309	skin:	n/a
36	chr1:246580717-246580767	HRE	kidney:	n/a
37	chr1:246580717-246580767	ProgFib	skin:	n/a
38	chr1:246580717-246580767	Caco-2	colon:	n/a
39	chr1:246580717-246580767	AoSMC	blood vessel:	n/a
40	chr1:246580717-246580767	IMR90	lung:	fetal
41	chr1:246580717-246580767	PFSK-1	brain:	n/a
42	chr1:246580717-246580767	NHBE	bronchial:	n/a
43	chr1:246580717-246580767	GM12892	blood:	n/a
44	chr1:246580717-246580767	SAEC	small airway:	n/a
45	chr1:246580717-246580767	GM12891	blood:	n/a
46	chr1:246580717-246580767	SKMC	muscle:	n/a
47	chr1:246580717-246580767	AG04449	skin:	fetal
48	chr1:246580717-246580767	HUVEC	blood vessel:	n/a
49	chr1:246580717-246580767	NB4	blood:	n/a
50	chr1:246580717-246580767	Jurkat	blood:	n/a

No data

Variant related genes	Relation type
SMYD3	TF binding region
SMYD3	CpG island

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10754514	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10802400	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10802401	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10924727	0.85[CEU][hapmap]
rs12021626	0.81[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12691530	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1879438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1889542	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2340778	0.88[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4654253	0.81[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57043010	0.96[ASN][1000 genomes]
rs6666645	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6669201	0.96[ASN][1000 genomes]
rs6672203	0.88[AFR][1000 genomes]
rs6686844	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7556042	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9787220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:47 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497871	chr1:245706209-246655353	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv534412	chr1:245747724-246655416	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003594	chr1:245801793-246649329	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1004119	chr1:245957145-246813150	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv535389	chr1:245957145-246813150	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1014529	chr1:245957145-246817877	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1000654	chr1:245966390-246778182	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv535392	chr1:245966390-246778182	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv868852	chr1:245969229-246811220	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv948348	chr1:246090818-246853200	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	nsv1007245	chr1:246120132-246619260	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv535395	chr1:246120132-246619260	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv430402	chr1:246124959-246787448	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv497890	chr1:246143172-246778453	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	nsv1005310	chr1:246151590-246666101	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1003239	chr1:246166737-246666101	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv535397	chr1:246166737-246666101	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
18	nsv998930	chr1:246166737-246702012	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
19	nsv1005825	chr1:246174208-246688635	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
20	nsv916235	chr1:246194535-246606790	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv535398	chr1:246194546-246686301	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv1001462	chr1:246194546-246686358	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
23	nsv535399	chr1:246194546-246686358	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
24	nsv949329	chr1:246220147-246710091	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv1005067	chr1:246289451-246619260	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv1012307	chr1:246289451-246655966	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv535403	chr1:246289451-246655966	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
28	nsv468839	chr1:246303128-246708467	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
29	nsv549528	chr1:246303128-246708467	Weak transcription Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
30	nsv1001496	chr1:246339647-246595982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
31	nsv1005573	chr1:246378676-246740427	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
32	nsv535405	chr1:246378676-246740427	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
33	nsv549531	chr1:246406762-246681116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
34	esv2757779	chr1:246407146-246740944	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
35	esv2759012	chr1:246407146-246740944	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
36	nsv428346	chr1:246407146-246740944	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
37	nsv1013800	chr1:246472691-246840960	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
38	nsv535409	chr1:246472691-246840960	Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
39	nsv997661	chr1:246482924-246702012	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
40	nsv873418	chr1:246512218-246636600	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	nsv999902	chr1:246530451-246608224	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
42	nsv535410	chr1:246530451-246608224	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
43	esv2762191	chr1:246546436-246815064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
44	nsv998644	chr1:246562080-246636600	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
45	nsv1002980	chr1:246569732-246635324	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
46	nsv535411	chr1:246569732-246635324	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
47	nsv524498	chr1:246576661-246618880	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:246554600-246594800	Weak transcription	Right Ventricle	heart
2	chr1:246557200-246590800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:246576400-246588600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:246577200-246588600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:246577200-246588600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:246577200-246588600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:246578800-246584000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:246579000-246585000	Weak transcription	Ovary	ovary
9	chr1:246579200-246580800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr1:246579200-246582000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:246579400-246581200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:246579600-246584200	Weak transcription	Pancreas	Pancrea
13	chr1:246579600-246584800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr1:246580000-246581000	Flanking Active TSS	Osteobl	bone
15	chr1:246580000-246581400	Enhancers	Brain Substantia Nigra	brain
16	chr1:246580000-246581400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr1:246580000-246581800	ZNF genes & repeats	NHEK	skin
18	chr1:246580000-246592000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr1:246580200-246581000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:246580200-246581000	Flanking Active TSS	NHDF-Ad	bronchial
21	chr1:246580200-246581200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:246580200-246581600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr1:246580200-246581800	Enhancers	Brain Hippocampus Middle	brain
24	chr1:246580200-246582200	Enhancers	Brain Anterior Caudate	brain
25	chr1:246580200-246582800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr1:246580400-246580800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:246580400-246581000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:246580400-246581000	ZNF genes & repeats	Aorta	Aorta
29	chr1:246580400-246581200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:246580400-246581200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:246580400-246581400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr1:246580400-246581600	Enhancers	Dnd41	blood
33	chr1:246580400-246582200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:246580400-246582200	ZNF genes & repeats	GM12878-XiMat	blood
35	chr1:246580400-246583000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:246580600-246580800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr1:246580600-246580800	Enhancers	A549	lung
38	chr1:246580600-246581000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:246580600-246581600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:246580600-246582000	Strong transcription	Primary T cells from cord blood	blood
41	chr1:246580600-246582400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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