The 2.0 version of rSNPBase

Variant report

Variant rs6674564
Chromosome Location chr1:214528553-214528554
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214493000-214534600 Weak transcription Brain Inferior Temporal Lobe brain
2 chr1:214503200-214537800 Weak transcription Gastric stomach
3 chr1:214504600-214533200 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:214507000-214529800 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr1:214508400-214529600 Weak transcription Pancreas Pancrea
6 chr1:214508400-214535000 Weak transcription Esophagus oesophagus
7 chr1:214508800-214528600 Weak transcription Fetal Intestine Large intestine
8 chr1:214511400-214529400 Weak transcription Aorta Aorta
9 chr1:214511400-214530400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr1:214511400-214531200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr1:214512000-214537000 Weak transcription Rectal Smooth Muscle rectum
12 chr1:214513600-214552200 Weak transcription ES-WA7 Cell Line embryonic stem cell
13 chr1:214514000-214537800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:214515400-214542600 Weak transcription Brain Substantia Nigra brain
15 chr1:214518400-214537800 Weak transcription Fetal Brain Male brain
16 chr1:214518600-214529000 Weak transcription Ovary ovary
17 chr1:214518800-214528800 Weak transcription Fetal Kidney kidney
18 chr1:214519000-214528600 Weak transcription Fetal Lung lung
19 chr1:214519000-214533800 Weak transcription Duodenum Mucosa Duodenum
20 chr1:214519000-214557800 Weak transcription Dnd41 blood
21 chr1:214519200-214577200 Weak transcription Primary hematopoietic stem cells blood
22 chr1:214520400-214529400 Weak transcription Fetal Intestine Small intestine
23 chr1:214521200-214537600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:214521600-214531000 Weak transcription Hela-S3 cervix
25 chr1:214521800-214528800 Weak transcription Placenta Placenta
26 chr1:214522800-214552800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr1:214523400-214530000 Weak transcription Colon Smooth Muscle Colon
28 chr1:214523400-214540800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr1:214523600-214529000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr1:214523800-214529400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr1:214523800-214529600 Weak transcription Placenta Amnion Placenta Amnion
32 chr1:214524400-214535400 Strong transcription Breast Myoepithelial Primary Cells Breast
33 chr1:214524400-214574400 Weak transcription Brain Hippocampus Middle brain
34 chr1:214524800-214529200 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:214524800-214531600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:214524800-214532200 Strong transcription HUVEC blood vessel
37 chr1:214524800-214534800 Strong transcription Muscle Satellite Cultured Cells --
38 chr1:214524800-214535200 Strong transcription NH-A brain
39 chr1:214524800-214535400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:214524800-214537800 Strong transcription NHEK skin
41 chr1:214524800-214539200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:214525000-214530000 Weak transcription Lung lung
43 chr1:214525000-214534800 Strong transcription HSMM muscle
44 chr1:214525000-214535600 Strong transcription NHDF-Ad bronchial
45 chr1:214525000-214537000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:214525200-214528600 Strong transcription ES-I3 Cell Line embryonic stem cell
47 chr1:214525600-214529000 Weak transcription Adipose Nuclei Adipose
48 chr1:214525600-214540000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr1:214525800-214532200 Strong transcription HMEC breast
50 chr1:214526000-214529000 Weak transcription H1 Cell Line embryonic stem cell

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015