Variant report

Variant rs6668557
Chromosome Location chr1:214544854-214544855
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214513600-214552200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:214519000-214557800 Weak transcription Dnd41 blood
3 chr1:214519200-214577200 Weak transcription Primary hematopoietic stem cells blood
4 chr1:214522800-214552800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr1:214524400-214574400 Weak transcription Brain Hippocampus Middle brain
6 chr1:214528600-214552800 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr1:214528600-214555800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr1:214528800-214551800 Strong transcription HUES64 Cell Line embryonic stem cell
9 chr1:214529000-214584200 Weak transcription Brain Anterior Caudate brain
10 chr1:214529400-214561800 Weak transcription Brain Angular Gyrus brain
11 chr1:214531600-214556800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr1:214534000-214557000 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:214536000-214545400 Strong transcription NH-A brain
14 chr1:214536200-214551000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr1:214537600-214545000 Weak transcription Rectal Smooth Muscle rectum
16 chr1:214537600-214577000 Weak transcription Stomach Mucosa stomach
17 chr1:214537800-214547400 Weak transcription Colon Smooth Muscle Colon
18 chr1:214537800-214549000 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr1:214538000-214556200 Weak transcription Duodenum Mucosa Duodenum
20 chr1:214538000-214556400 Weak transcription iPS-15b Cell Line embryonic stem cell
21 chr1:214538000-214559400 Weak transcription Small Intestine intestine
22 chr1:214538200-214556600 Weak transcription Pancreas Pancrea
23 chr1:214538400-214545000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:214538600-214546000 Weak transcription Lung lung
25 chr1:214538600-214550600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:214538800-214549400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:214538800-214556400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr1:214539600-214561600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:214539800-214551000 Strong transcription NHDF-Ad bronchial
30 chr1:214540200-214545200 Strong transcription Muscle Satellite Cultured Cells --
31 chr1:214540200-214547600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr1:214540400-214548400 Strong transcription NHEK skin
33 chr1:214540400-214552000 Strong transcription HUVEC blood vessel
34 chr1:214540600-214549200 Strong transcription HMEC breast
35 chr1:214540600-214549400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:214540800-214545200 Strong transcription Fetal Kidney kidney
37 chr1:214540800-214546000 Strong transcription Fetal Lung lung
38 chr1:214540800-214546400 Strong transcription Duodenum Smooth Muscle Duodenum
39 chr1:214540800-214546600 Strong transcription Stomach Smooth Muscle stomach
40 chr1:214540800-214546800 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr1:214540800-214547200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr1:214540800-214547200 Strong transcription Fetal Stomach stomach
43 chr1:214540800-214547400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr1:214541000-214545600 Strong transcription Fetal Muscle Leg muscle
45 chr1:214541000-214546600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr1:214541200-214546200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:214541200-214552200 Weak transcription H9 Cell Line embryonic stem cell
48 chr1:214541600-214566600 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr1:214542000-214545600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr1:214542000-214556200 Weak transcription Brain Cingulate Gyrus brain

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