The 2.0 version of rSNPBase

Variant report

Variant rs3754135
Chromosome Location chr1:214501209-214501210
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214471000-214517400 Weak transcription Fetal Kidney kidney
2 chr1:214477400-214506400 Weak transcription Colon Smooth Muscle Colon
3 chr1:214477400-214506400 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr1:214477400-214511000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:214479000-214503000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:214482200-214510600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:214483600-214501600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr1:214484400-214510800 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr1:214484800-214501800 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr1:214484800-214507800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr1:214484800-214522000 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr1:214485000-214506400 Weak transcription Rectal Smooth Muscle rectum
13 chr1:214485000-214513200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr1:214486200-214526000 Weak transcription Psoas Muscle Psoas
15 chr1:214487400-214502600 Weak transcription Colonic Mucosa Colon
16 chr1:214487400-214509400 Strong transcription Primary T cells from cord blood blood
17 chr1:214487600-214506200 Weak transcription Small Intestine intestine
18 chr1:214487800-214510600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr1:214488200-214517600 Weak transcription Brain Germinal Matrix brain
20 chr1:214488200-214520800 Weak transcription Hela-S3 cervix
21 chr1:214488800-214510600 Weak transcription Fetal Brain Male brain
22 chr1:214489400-214506200 Weak transcription A549 lung
23 chr1:214489400-214506600 Weak transcription Ovary ovary
24 chr1:214490200-214501800 Weak transcription NHLF lung
25 chr1:214490200-214502400 Weak transcription Placenta Placenta
26 chr1:214490400-214502400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:214490800-214518200 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr1:214491000-214503400 Weak transcription Placenta Amnion Placenta Amnion
29 chr1:214491600-214506000 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr1:214492600-214502200 Weak transcription Pancreas Pancrea
31 chr1:214492600-214502400 Weak transcription Muscle Satellite Cultured Cells --
32 chr1:214492600-214502400 Weak transcription HSMMtube muscle
33 chr1:214492800-214501600 Weak transcription Right Ventricle heart
34 chr1:214492800-214502800 Weak transcription Thymus Thymus
35 chr1:214492800-214509200 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr1:214493000-214501600 Weak transcription Duodenum Mucosa Duodenum
37 chr1:214493000-214502400 Weak transcription NHDF-Ad bronchial
38 chr1:214493000-214502400 Weak transcription Osteobl bone
39 chr1:214493000-214502600 Weak transcription Esophagus oesophagus
40 chr1:214493000-214505400 Weak transcription HMEC breast
41 chr1:214493000-214510600 Weak transcription Aorta Aorta
42 chr1:214493000-214519800 Weak transcription Brain Hippocampus Middle brain
43 chr1:214493000-214534600 Weak transcription Brain Inferior Temporal Lobe brain
44 chr1:214493200-214501400 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr1:214493200-214502400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:214493200-214502600 Weak transcription Gastric stomach
47 chr1:214493200-214502600 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr1:214493200-214502800 Weak transcription Fetal Brain Female brain
49 chr1:214493200-214503200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr1:214493400-214502400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015