Variant report

Variant	rs12131852
Chromosome Location	chr1:214433323-214433324
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:214393546..214395797-chr1:214432514..214434746,2	MCF-7	breast:
2	chr1:214433101..214434885-chr1:214442824..214445144,2	MCF-7	breast:
3	chr1:214431347..214435470-chr1:214452368..214457284,9	MCF-7	breast:
4	chr1:214431964..214433793-chr1:214436755..214439299,2	MCF-7	breast:
5	chr1:214422523..214426510-chr1:214432301..214435212,4	MCF-7	breast:
6	chr1:214431778..214435128-chr1:214499085..214502575,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPN14-2	chr1:214427429-214436307	XLOC_001200

No data

Variant related genes	Relation type
ENSG00000143499	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12116805	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12125521	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12144378	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12726700	0.89[JPT][hapmap]
rs2133175	0.89[JPT][hapmap]
rs34071166	0.93[ASN][1000 genomes]
rs34334109	0.93[ASN][1000 genomes]
rs3754135	0.89[JPT][hapmap]
rs6540826	0.89[JPT][hapmap]
rs67319720	0.93[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214431400-214433400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr1:214431400-214434200	Weak transcription	Fetal Heart	heart
3	chr1:214432000-214433400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:214432000-214433800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:214432400-214434000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:214432400-214435400	Enhancers	HUVEC	blood vessel
7	chr1:214432600-214433400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:214432600-214433400	Enhancers	HMEC	breast
9	chr1:214432600-214433400	Enhancers	NH-A	brain
10	chr1:214432600-214433400	Enhancers	Osteobl	bone
11	chr1:214432800-214433400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:214432800-214433400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:214432800-214433600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:214432800-214433600	Enhancers	A549	lung
15	chr1:214433000-214433400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:214433000-214433400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:214433000-214433400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:214433000-214433400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:214433000-214433400	Enhancers	Hela-S3	cervix
20	chr1:214433000-214433400	Enhancers	NHEK	skin
21	chr1:214433000-214433600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:214433000-214434000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:214433000-214434600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:214433000-214434800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:214433200-214433400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:214433200-214433800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:214433200-214434400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:214433200-214434400	Weak transcription	Left Ventricle	heart
29	chr1:214433200-214434600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr1:214433200-214434800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr1:214433200-214434800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:214433200-214435000	Weak transcription	NHLF	lung
33	chr1:214433200-214437000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:214433200-214437200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr1:214433200-214437200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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