Variant report
| Variant | rs66758084 |
|---|---|
| Chromosome Location | chr4:106045496-106045497 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:105986815..105988687-chr4:106044806..106047143,2 | MCF-7 | breast: | |
| 2 | chr4:105884034..105895590-chr4:106044778..106053207,47 | MCF-7 | breast: | |
| 3 | chr4:105886561..105894585-chr4:106043962..106052941,18 | MCF-7 | breast: | |
| 4 | chr4:105826232..105829985-chr4:106045106..106049151,6 | MCF-7 | breast: | |
| 5 | chr4:105976784..105986292-chr4:106044571..106052702,25 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248373 | Chromatin interaction |
| ENSG00000248242 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10000800 | 0.86[EUR][1000 genomes] |
| rs11947243 | 0.84[EUR][1000 genomes] |
| rs17035270 | 0.83[EUR][1000 genomes] |
| rs17429654 | 0.85[EUR][1000 genomes] |
| rs2107054 | 0.84[EUR][1000 genomes] |
| rs28590233 | 0.84[EUR][1000 genomes] |
| rs28622070 | 0.81[EUR][1000 genomes] |
| rs28758290 | 0.86[EUR][1000 genomes] |
| rs57328508 | 0.86[EUR][1000 genomes] |
| rs67149069 | 0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72665903 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461609 | chr4:105869548-106366209 | Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv470063 | chr4:105869548-106366209 | Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 3 | nsv595007 | chr4:105869548-106366209 | Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 4 | nsv830025 | chr4:105988876-106137946 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
