Variant report

Variant	rs17429654
Chromosome Location	chr4:106024581-106024582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106022079..106026589-chr4:106064672..106069140,4	MCF-7	breast:
2	chr4:106022926..106025041-chr4:106035564..106037106,2	MCF-7	breast:
3	chr4:106017219..106019280-chr4:106021884..106024669,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168769	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10000800	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11734200	1.00[JPT][hapmap]
rs11947243	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs1490579	1.00[JPT][hapmap]
rs17035193	1.00[JPT][hapmap]
rs17035270	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429647	0.81[AMR][1000 genomes]
rs195147	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs195148	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2107054	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28590233	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28622070	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28758290	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5008225	1.00[JPT][hapmap]
rs57328508	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6533178	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs66758084	0.85[EUR][1000 genomes]
rs67149069	0.85[EUR][1000 genomes]
rs6825425	1.00[JPT][hapmap]
rs6845933	1.00[JPT][hapmap]
rs72665903	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72665906	0.81[AMR][1000 genomes]
rs7670900	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830024	chr4:105884350-106037816	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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