Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:105817499..105822928-chr4:105976984..105982661,7	MCF-7	breast:
2	chr4:105976784..105986292-chr4:106044571..106052702,25	MCF-7	breast:
3	chr4:105975764..105988950-chr4:106062358..106070647,39	MCF-7	breast:
4	chr4:105977405..105980331-chr4:106058193..106060635,2	MCF-7	breast:
5	chr4:105976101..105984516-chr4:106064112..106070622,19	MCF-7	breast:
6	chr4:105887583..105897108-chr4:105977318..105984912,20	MCF-7	breast:
7	chr4:105891395..105896462-chr4:105976646..105979475,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11734200	1.00[JPT][hapmap]
rs12500583	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12511146	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13117794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490579	1.00[JPT][hapmap]
rs17035193	1.00[JPT][hapmap]
rs17429654	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1907144	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195142	1.00[ASN][1000 genomes]
rs195144	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195145	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195146	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195150	0.89[EUR][1000 genomes]
rs2130691	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2866765	0.86[EUR][1000 genomes]
rs5008225	1.00[JPT][hapmap]
rs6533178	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6825425	1.00[JPT][hapmap]
rs6845933	1.00[JPT][hapmap]
rs7699148	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830024	chr4:105884350-106037816	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105972000-105978800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:105972600-105979200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:105976200-105977800	ZNF genes & repeats	GM12878-XiMat	blood
4	chr4:105976200-105978400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr4:105976600-105982400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:105976800-105978400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr4:105976800-105978800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:105977000-105978200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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