Variant report

Variant	rs6675980
Chromosome Location	chr1:224898863-224898864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10915704	1.00[CEU][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1436168	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2117941	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4653594	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[MEX][hapmap];0.95[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6426152	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
2	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
3	chr1:224896000-224902000	Weak transcription	Dnd41	blood
4	chr1:224896200-224914000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:224896400-224910600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:224896400-224913800	Weak transcription	NHLF	lung
7	chr1:224896400-224914000	Weak transcription	NH-A	brain
8	chr1:224896600-224899400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:224896600-224902600	Weak transcription	NHDF-Ad	bronchial
10	chr1:224896800-224899400	Weak transcription	HMEC	breast
11	chr1:224897000-224901200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:224897200-224899600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:224897200-224900600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:224897400-224900200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:224898000-224899000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:224898000-224901600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:224898400-224904400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:224898600-224902000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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