Variant report

Variant	rs667755
Chromosome Location	chr11:102327741-102327742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102321122..102328963-chr11:102333676..102341979,14	MCF-7	breast:
2	chr11:102325862..102328807-chr11:102333088..102335949,2	K562	blood:

Variant related genes	Relation type
ENSG00000255482	Chromatin interaction
ENSG00000152558	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2436036	1.00[MEX][hapmap]
rs2509683	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[TSI][hapmap]
rs523356	0.82[CEU][hapmap]
rs660908	1.00[MEX][hapmap]
rs670314	1.00[CHD][hapmap];0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs667755	THNSL2	trans	lymphoblastoid	seeQTL

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102324200-102337600	Weak transcription	Lung	lung
2	chr11:102324400-102328000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:102324400-102328600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:102324400-102331200	Weak transcription	Pancreas	Pancrea
5	chr11:102324600-102327800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:102324600-102327800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:102324600-102328000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:102324600-102328000	Enhancers	Hela-S3	cervix
9	chr11:102324600-102328600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:102324600-102328600	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:102324600-102328600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:102324600-102329000	Enhancers	NHEK	skin
13	chr11:102324600-102329800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:102324600-102330000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:102324600-102331800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:102324600-102344600	Weak transcription	Colonic Mucosa	Colon
17	chr11:102324800-102328200	Weak transcription	Brain Anterior Caudate	brain
18	chr11:102324800-102335000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:102324800-102335800	Enhancers	HepG2	liver
20	chr11:102325000-102328000	Enhancers	Brain Germinal Matrix	brain
21	chr11:102325000-102328000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:102325000-102328600	Weak transcription	Fetal Lung	lung
23	chr11:102325000-102329000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:102325000-102334600	Enhancers	Liver	Liver
25	chr11:102325000-102335600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:102325200-102328400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:102325200-102328600	Weak transcription	Fetal Brain Female	brain
28	chr11:102325200-102330000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:102325200-102335000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:102325400-102328000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:102325400-102329800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:102325600-102327800	Enhancers	Placenta	Placenta
33	chr11:102325600-102329000	Enhancers	A549	lung
34	chr11:102325600-102335600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr11:102325800-102327800	Enhancers	Esophagus	oesophagus
36	chr11:102325800-102328600	Enhancers	GM12878-XiMat	blood
37	chr11:102325800-102329600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr11:102326000-102327800	Enhancers	HUVEC	blood vessel
39	chr11:102326000-102332200	Weak transcription	Fetal Intestine Large	intestine
40	chr11:102326000-102333400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:102326000-102335400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:102326200-102327800	Enhancers	Primary B cells from cord blood	blood
43	chr11:102326200-102327800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:102326400-102328200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:102326400-102335200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:102326600-102328600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:102326600-102329800	Weak transcription	Thymus	Thymus
48	chr11:102326600-102334800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:102326600-102337000	Weak transcription	Fetal Thymus	thymus
50	chr11:102326800-102328000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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