Variant report

Variant	rs660908
Chromosome Location	chr11:102316631-102316632
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102306119..102309748-chr11:102314696..102317060,3	K562	blood:
2	chr11:102306851..102309748-chr11:102315391..102317524,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10219215	1.00[CHB][hapmap]
rs1058606	1.00[CHB][hapmap]
rs10895296	1.00[CHB][hapmap]
rs11225235	1.00[CHB][hapmap]
rs11225237	1.00[CHB][hapmap]
rs11547915	1.00[CHB][hapmap]
rs11601671	1.00[CHB][hapmap]
rs11604008	1.00[CHB][hapmap]
rs11604189	1.00[CHB][hapmap]
rs11605066	1.00[CHB][hapmap]
rs11605133	1.00[CHB][hapmap]
rs11607908	1.00[CHB][hapmap]
rs12271457	1.00[CHB][hapmap]
rs12271900	1.00[ASN][1000 genomes]
rs12274405	1.00[CHB][hapmap]
rs12275185	1.00[CHB][hapmap]
rs12275349	1.00[CHB][hapmap]
rs12277594	1.00[CHB][hapmap]
rs12277853	1.00[CHB][hapmap]
rs12279056	1.00[CHB][hapmap]
rs12283885	1.00[CHB][hapmap]
rs12291114	1.00[CHB][hapmap]
rs12293094	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12293834	1.00[CHB][hapmap]
rs12792649	1.00[CHB][hapmap]
rs17350205	1.00[CHB][hapmap]
rs17350590	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1943781	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs2436036	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2567752	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs34740624	1.00[CHB][hapmap]
rs484068	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs485020	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs525305	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs531350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs549513	0.85[CEU][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes]
rs577850	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs589068	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs589533	0.91[CEU][hapmap];0.95[AFR][1000 genomes]
rs60056981	1.00[ASN][1000 genomes]
rs637708	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs667755	1.00[MEX][hapmap]
rs670334	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[LWK][hapmap];0.90[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102300400-102319800	Weak transcription	Fetal Kidney	kidney
2	chr11:102300800-102320600	Weak transcription	Ovary	ovary
3	chr11:102301200-102320800	Weak transcription	Left Ventricle	heart
4	chr11:102301400-102319800	Weak transcription	Pancreas	Pancrea
5	chr11:102301400-102320600	Weak transcription	Right Ventricle	heart
6	chr11:102301400-102320800	Weak transcription	Adipose Nuclei	Adipose
7	chr11:102301400-102321000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:102301400-102322400	Weak transcription	Spleen	Spleen
9	chr11:102301800-102316800	Weak transcription	HSMMtube	muscle
10	chr11:102302400-102318000	Weak transcription	Small Intestine	intestine
11	chr11:102304000-102317000	Weak transcription	NH-A	brain
12	chr11:102304000-102320600	Weak transcription	Fetal Brain Female	brain
13	chr11:102304000-102322400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:102304200-102322000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:102306800-102319800	Weak transcription	Hela-S3	cervix
16	chr11:102306800-102320400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:102307600-102318000	Weak transcription	Fetal Brain Male	brain
18	chr11:102308000-102317000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:102308600-102317200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:102308600-102319800	Weak transcription	Esophagus	oesophagus
21	chr11:102309600-102318000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:102309600-102320400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:102309600-102322400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:102309800-102318000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:102309800-102318800	Weak transcription	Thymus	Thymus
26	chr11:102309800-102320400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:102309800-102320600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:102309800-102322400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:102310000-102316800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:102310000-102317200	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:102310000-102318400	Weak transcription	Brain Substantia Nigra	brain
32	chr11:102310000-102318400	Weak transcription	K562	blood
33	chr11:102310000-102319600	Weak transcription	Gastric	stomach
34	chr11:102310000-102319800	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:102310000-102321600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:102310200-102318000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:102310200-102322400	Weak transcription	Lung	lung
38	chr11:102310800-102316800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:102310800-102318400	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:102310800-102318600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:102314400-102320800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:102314800-102316800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:102314800-102317000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:102314800-102317800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:102314800-102319000	Strong transcription	Fetal Thymus	thymus
46	chr11:102314800-102319200	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:102314800-102319200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:102314800-102319600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:102314800-102320800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:102315000-102319400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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