Variant report

Variant	rs12271900
Chromosome Location	chr11:102325301-102325302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:102321122..102328963-chr11:102333676..102341979,14	MCF-7	breast:
2	chr11:102279177..102281049-chr11:102324433..102326986,2	K562	blood:
3	chr11:102320576..102325526-chr11:102337005..102343107,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255482	Chromatin interaction
ENSG00000152558	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1058606	0.98[EUR][1000 genomes]
rs10895292	0.83[EUR][1000 genomes]
rs10895293	0.83[EUR][1000 genomes]
rs10895296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11225235	0.83[EUR][1000 genomes]
rs11225236	0.83[EUR][1000 genomes]
rs11225237	0.83[EUR][1000 genomes]
rs11225242	0.98[EUR][1000 genomes]
rs11225243	0.98[EUR][1000 genomes]
rs11225244	0.98[EUR][1000 genomes]
rs11225247	0.98[EUR][1000 genomes]
rs11225251	0.92[EUR][1000 genomes]
rs11547915	0.98[EUR][1000 genomes]
rs11547916	0.98[EUR][1000 genomes]
rs11601671	0.83[EUR][1000 genomes]
rs11603677	0.83[EUR][1000 genomes]
rs11604008	0.83[EUR][1000 genomes]
rs11604271	0.83[EUR][1000 genomes]
rs11605010	0.98[EUR][1000 genomes]
rs11605066	0.98[EUR][1000 genomes]
rs11605133	0.98[EUR][1000 genomes]
rs11605573	0.83[EUR][1000 genomes]
rs11607657	0.96[EUR][1000 genomes]
rs11607908	0.98[EUR][1000 genomes]
rs12269847	0.98[EUR][1000 genomes]
rs12271457	0.83[EUR][1000 genomes]
rs12274405	0.83[EUR][1000 genomes]
rs12275185	0.98[EUR][1000 genomes]
rs12277594	0.83[EUR][1000 genomes]
rs12277747	0.96[EUR][1000 genomes]
rs12277853	0.83[EUR][1000 genomes]
rs12279056	0.83[EUR][1000 genomes]
rs12282486	0.83[EUR][1000 genomes]
rs12283885	0.83[EUR][1000 genomes]
rs12290033	0.83[EUR][1000 genomes]
rs12291114	0.83[EUR][1000 genomes]
rs12293094	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293834	0.98[EUR][1000 genomes]
rs13377311	0.88[EUR][1000 genomes]
rs17349689	0.98[EUR][1000 genomes]
rs17350205	0.98[EUR][1000 genomes]
rs17350590	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57346058	0.98[EUR][1000 genomes]
rs57562739	0.98[EUR][1000 genomes]
rs58250524	0.83[EUR][1000 genomes]
rs60056981	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61123589	0.94[EUR][1000 genomes]
rs61334418	0.98[EUR][1000 genomes]
rs660908	1.00[ASN][1000 genomes]
rs7104841	0.98[EUR][1000 genomes]
rs7113906	0.83[EUR][1000 genomes]
rs7114048	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102324200-102325800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr11:102324200-102325800	Weak transcription	Esophagus	oesophagus
3	chr11:102324200-102325800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:102324200-102326200	Enhancers	Stomach Mucosa	stomach
5	chr11:102324200-102326800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:102324200-102326800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr11:102324200-102337600	Weak transcription	Lung	lung
8	chr11:102324400-102325400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:102324400-102325600	Weak transcription	HSMMtube	muscle
10	chr11:102324400-102325800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr11:102324400-102326000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:102324400-102326200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:102324400-102326400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:102324400-102326600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr11:102324400-102326600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr11:102324400-102326600	Enhancers	Fetal Thymus	thymus
17	chr11:102324400-102327000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:102324400-102328000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:102324400-102328600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:102324400-102331200	Weak transcription	Pancreas	Pancrea
21	chr11:102324600-102325600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
22	chr11:102324600-102325600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:102324600-102325600	Weak transcription	K562	blood
24	chr11:102324600-102325800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr11:102324600-102325800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
26	chr11:102324600-102325800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:102324600-102325800	Weak transcription	Fetal Intestine Small	intestine
28	chr11:102324600-102325800	Weak transcription	HSMM	muscle
29	chr11:102324600-102326000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:102324600-102326000	Weak transcription	HUVEC	blood vessel
31	chr11:102324600-102326200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:102324600-102326200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
33	chr11:102324600-102326200	Weak transcription	Primary B cells from cord blood	blood
34	chr11:102324600-102326200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr11:102324600-102326200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:102324600-102326400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr11:102324600-102326600	Enhancers	Thymus	Thymus
38	chr11:102324600-102326600	Weak transcription	Osteobl	bone
39	chr11:102324600-102326800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:102324600-102327000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:102324600-102327000	Enhancers	Primary T cells from cord blood	blood
42	chr11:102324600-102327000	Enhancers	HMEC	breast
43	chr11:102324600-102327200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:102324600-102327400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:102324600-102327400	Weak transcription	Adipose Nuclei	Adipose
46	chr11:102324600-102327600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:102324600-102327800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:102324600-102327800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:102324600-102328000	Weak transcription	Brain Substantia Nigra	brain
50	chr11:102324600-102328000	Enhancers	Hela-S3	cervix

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