Variant report

Variant	rs11225236
Chromosome Location	chr11:102250098-102250099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:102247932..102250418-chr11:102321607..102323782,2	K562	blood:
2	chr11:102246701..102248376-chr11:102249971..102251901,2	K562	blood:
3	chr11:102217499..102220064-chr11:102248681..102250853,2	K562	blood:
4	chr11:102248264..102252607-chr11:102254187..102258026,4	K562	blood:
5	chr11:102247498..102250986-chr11:102255222..102258637,4	K562	blood:
6	chr11:102249961..102251726-chr11:102253598..102255755,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110330	Chromatin interaction
ENSG00000255337	Chromatin interaction
ENSG00000152558	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1058606	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10895296	0.85[EUR][1000 genomes]
rs11225222	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11225229	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11225235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225242	0.85[EUR][1000 genomes]
rs11225243	0.85[EUR][1000 genomes]
rs11225244	0.85[EUR][1000 genomes]
rs11225247	0.85[EUR][1000 genomes]
rs11225251	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11501342	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11501343	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11501344	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11547915	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11547916	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604189	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605010	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605066	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605087	1.00[ASN][1000 genomes]
rs11605133	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605573	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605915	1.00[ASN][1000 genomes]
rs11607214	1.00[ASN][1000 genomes]
rs11607657	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607908	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269847	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270109	1.00[ASN][1000 genomes]
rs12271457	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271900	0.83[EUR][1000 genomes]
rs12273698	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12274405	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275185	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275349	1.00[ASN][1000 genomes]
rs12277594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277747	0.83[EUR][1000 genomes]
rs12277853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282486	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290033	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291114	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293094	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12293834	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275850	1.00[ASN][1000 genomes]
rs12792649	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290044	1.00[ASN][1000 genomes]
rs1318199	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377311	1.00[ASN][1000 genomes]
rs1574410	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349689	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350205	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350590	0.83[EUR][1000 genomes]
rs1943781	1.00[ASN][1000 genomes]
rs2510491	1.00[ASN][1000 genomes]
rs34104132	1.00[ASN][1000 genomes]
rs34296997	1.00[ASN][1000 genomes]
rs34740624	1.00[ASN][1000 genomes]
rs35457182	1.00[ASN][1000 genomes]
rs35569122	1.00[ASN][1000 genomes]
rs35623064	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35972941	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484068	1.00[ASN][1000 genomes]
rs485020	1.00[ASN][1000 genomes]
rs525305	1.00[ASN][1000 genomes]
rs531350	1.00[ASN][1000 genomes]
rs57346058	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57562739	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577850	1.00[ASN][1000 genomes]
rs58250524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60056981	0.83[EUR][1000 genomes]
rs61123589	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61334418	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895370	1.00[ASN][1000 genomes]
rs61895375	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61895376	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs637708	1.00[ASN][1000 genomes]
rs670334	1.00[ASN][1000 genomes]
rs7104841	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113906	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114048	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102225600-102255400	Weak transcription	Fetal Heart	heart
3	chr11:102232400-102259600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:102232600-102255000	Weak transcription	Right Atrium	heart
5	chr11:102235600-102255000	Weak transcription	Right Ventricle	heart
6	chr11:102235800-102259600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:102237000-102255400	Weak transcription	Aorta	Aorta
8	chr11:102237000-102263800	Weak transcription	Small Intestine	intestine
9	chr11:102239600-102250200	Weak transcription	Fetal Kidney	kidney
10	chr11:102239600-102259000	Weak transcription	Fetal Brain Male	brain
11	chr11:102239800-102254600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:102240000-102250200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:102245400-102278000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:102245600-102252200	Strong transcription	Primary B cells from peripheral blood	blood
15	chr11:102245600-102252600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:102245600-102252800	Strong transcription	Duodenum Mucosa	Duodenum
17	chr11:102245600-102253000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:102245600-102253800	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr11:102245600-102255200	Strong transcription	Placenta	Placenta
20	chr11:102245600-102256600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr11:102245600-102258600	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr11:102245600-102266200	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:102245600-102275600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:102245800-102252600	Strong transcription	Fetal Lung	lung
25	chr11:102245800-102257200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:102245800-102260400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr11:102245800-102260800	Strong transcription	HSMM	muscle
28	chr11:102245800-102275000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr11:102246000-102253200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:102246000-102253800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:102246000-102255000	Weak transcription	Lung	lung
32	chr11:102246000-102255200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:102246000-102255800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:102246000-102261800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:102246000-102278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr11:102246200-102250800	Strong transcription	K562	blood
37	chr11:102246200-102251400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:102246200-102251400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:102246200-102252400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:102246200-102253400	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr11:102246200-102255000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:102246200-102255000	Weak transcription	Esophagus	oesophagus
43	chr11:102246200-102255000	Weak transcription	Spleen	Spleen
44	chr11:102246200-102255400	Strong transcription	Fetal Thymus	thymus
45	chr11:102246200-102261800	Weak transcription	Gastric	stomach
46	chr11:102246200-102263800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr11:102246200-102267000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:102246200-102274400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:102246200-102281000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:102246200-102281000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links