Variant report

Variant	rs11607908
Chromosome Location	chr11:102307399-102307400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102306119..102309748-chr11:102314696..102317060,3	K562	blood:
2	chr11:102306851..102309748-chr11:102315391..102317524,3	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10219215	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs1058606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895292	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895293	0.85[EUR][1000 genomes]
rs10895296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10895299	1.00[AFR][1000 genomes]
rs11225222	1.00[ASN][1000 genomes]
rs11225229	1.00[ASN][1000 genomes]
rs11225235	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225236	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225242	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11225243	1.00[EUR][1000 genomes]
rs11225244	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11225247	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11225251	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225266	1.00[AFR][1000 genomes]
rs11225278	1.00[AFR][1000 genomes]
rs11225286	1.00[AFR][1000 genomes]
rs11225287	1.00[AFR][1000 genomes]
rs11225290	1.00[AFR][1000 genomes]
rs11225297	1.00[AFR][1000 genomes]
rs11225299	1.00[AFR][1000 genomes]
rs11225300	1.00[AFR][1000 genomes]
rs11501342	1.00[ASN][1000 genomes]
rs11501343	1.00[ASN][1000 genomes]
rs11501344	1.00[ASN][1000 genomes]
rs11547915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11547916	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603677	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604189	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604271	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605087	1.00[ASN][1000 genomes]
rs11605133	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605573	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605915	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11607214	1.00[ASN][1000 genomes]
rs11607657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184413	1.00[AFR][1000 genomes]
rs12269847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270109	1.00[ASN][1000 genomes]
rs12271457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271900	0.98[EUR][1000 genomes]
rs12273698	1.00[ASN][1000 genomes]
rs12274405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275349	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12277594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277747	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12277853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282486	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290033	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs12293834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275850	1.00[ASN][1000 genomes]
rs12792649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290044	1.00[ASN][1000 genomes]
rs1317775	1.00[CEU][hapmap]
rs1318199	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377311	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1574410	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098230	1.00[AFR][1000 genomes]
rs17349689	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17769668	1.00[AFR][1000 genomes]
rs1943781	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2436036	1.00[CHB][hapmap]
rs2510491	1.00[ASN][1000 genomes]
rs34104132	1.00[ASN][1000 genomes]
rs34296997	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34740624	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35457182	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35569122	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35623064	1.00[ASN][1000 genomes]
rs35972941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484068	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs485020	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs525305	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs531350	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs57346058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57562739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577850	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs58250524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60056981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61123589	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61334418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895370	1.00[ASN][1000 genomes]
rs61895375	1.00[ASN][1000 genomes]
rs61895376	1.00[ASN][1000 genomes]
rs637708	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs660908	1.00[CHB][hapmap]
rs670334	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7104841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113906	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114048	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3472086	chr11:102303456-102307576	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3472097	chr11:102303456-102307576	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv11325	chr11:102303536-102307481	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102284600-102308600	Weak transcription	Lung	lung
2	chr11:102291600-102307800	Weak transcription	K562	blood
3	chr11:102293000-102316000	Weak transcription	HUVEC	blood vessel
4	chr11:102295400-102307600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:102298200-102316000	Weak transcription	Fetal Lung	lung
6	chr11:102300400-102319800	Weak transcription	Fetal Kidney	kidney
7	chr11:102300800-102316600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:102300800-102320600	Weak transcription	Ovary	ovary
9	chr11:102301200-102320800	Weak transcription	Left Ventricle	heart
10	chr11:102301400-102316200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:102301400-102316600	Weak transcription	NHLF	lung
12	chr11:102301400-102319800	Weak transcription	Pancreas	Pancrea
13	chr11:102301400-102320600	Weak transcription	Right Ventricle	heart
14	chr11:102301400-102320800	Weak transcription	Adipose Nuclei	Adipose
15	chr11:102301400-102321000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:102301400-102322400	Weak transcription	Spleen	Spleen
17	chr11:102301600-102307400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:102301600-102307600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:102301600-102308400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:102301600-102309000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:102301600-102316600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:102301800-102309200	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:102301800-102309600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:102301800-102316800	Weak transcription	HSMMtube	muscle
25	chr11:102302400-102307400	Weak transcription	Brain Anterior Caudate	brain
26	chr11:102302400-102308600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:102302400-102309600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:102302400-102309600	ZNF genes & repeats	GM12878-XiMat	blood
29	chr11:102302400-102318000	Weak transcription	Small Intestine	intestine
30	chr11:102302600-102307600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:102302800-102307600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:102303800-102309000	Strong transcription	HepG2	liver
33	chr11:102304000-102307400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:102304000-102307800	Weak transcription	Liver	Liver
35	chr11:102304000-102308400	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:102304000-102308600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:102304000-102308800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:102304000-102309000	Weak transcription	Fetal Intestine Large	intestine
39	chr11:102304000-102309400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:102304000-102309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:102304000-102309400	Weak transcription	Colonic Mucosa	Colon
42	chr11:102304000-102309400	Weak transcription	Gastric	stomach
43	chr11:102304000-102316400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr11:102304000-102316600	Weak transcription	HMEC	breast
45	chr11:102304000-102317000	Weak transcription	NH-A	brain
46	chr11:102304000-102320600	Weak transcription	Fetal Brain Female	brain
47	chr11:102304000-102322400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:102304200-102307800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:102304200-102308600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:102304200-102308600	Weak transcription	Fetal Stomach	stomach

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