Variant report

Variant	rs12184413
Chromosome Location	chr11:102389588-102389589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102388774..102390376-chr11:102390959..102392573,2	K562	blood:
2	chr11:102387787..102390274-chr11:102391073..102393822,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10502001	1.00[JPT][hapmap]
rs10895299	1.00[AFR][1000 genomes]
rs10895306	1.00[JPT][hapmap]
rs10895307	1.00[JPT][hapmap]
rs11225266	1.00[AFR][1000 genomes]
rs11225278	1.00[AFR][1000 genomes]
rs11225286	1.00[AFR][1000 genomes]
rs11225287	1.00[AFR][1000 genomes]
rs11225290	1.00[AFR][1000 genomes]
rs11225297	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11225299	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11225300	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11225303	1.00[JPT][hapmap]
rs11225307	1.00[JPT][hapmap]
rs11225308	1.00[JPT][hapmap]
rs11225309	1.00[JPT][hapmap]
rs11547915	1.00[AFR][1000 genomes]
rs11605066	1.00[AFR][1000 genomes]
rs11605915	1.00[AFR][1000 genomes]
rs11607657	1.00[AFR][1000 genomes]
rs11607908	1.00[AFR][1000 genomes]
rs1318199	1.00[AFR][1000 genomes]
rs14983	1.00[JPT][hapmap]
rs17098230	1.00[AFR][1000 genomes]
rs17350205	1.00[AFR][1000 genomes]
rs17769668	1.00[AFR][1000 genomes]
rs17878328	0.91[ASN][1000 genomes]
rs2156528	1.00[JPT][hapmap]
rs2187364	1.00[JPT][hapmap]
rs34296997	1.00[AFR][1000 genomes]
rs35457182	1.00[AFR][1000 genomes]
rs35569122	1.00[AFR][1000 genomes]
rs35972941	1.00[AFR][1000 genomes]
rs57346058	1.00[AFR][1000 genomes]
rs57562739	1.00[AFR][1000 genomes]
rs58250524	1.00[AFR][1000 genomes]
rs60056981	1.00[AFR][1000 genomes]
rs61334418	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv469990	chr11:102335609-102413943	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv556150	chr11:102335609-102415859	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv468854	chr11:102336617-102413943	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv556151	chr11:102336617-102413943	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv972953	chr11:102378603-102393518	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102385800-102389800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:102388600-102389600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:102388600-102390000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:102389200-102389600	Enhancers	HMEC	breast
5	chr11:102389400-102389600	ZNF genes & repeats	Aorta	Aorta
6	chr11:102389400-102389800	Enhancers	HUES48 Cell Line	embryonic stem cell

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