The 2.0 version of rSNPBase

Variant report

Variant rs57562739
Chromosome Location chr11:102306641-102306642
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:102284600-102308600 Weak transcription Lung lung
2 chr11:102291600-102307800 Weak transcription K562 blood
3 chr11:102293000-102316000 Weak transcription HUVEC blood vessel
4 chr11:102295400-102307600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr11:102298200-102316000 Weak transcription Fetal Lung lung
6 chr11:102300400-102319800 Weak transcription Fetal Kidney kidney
7 chr11:102300800-102316600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr11:102300800-102320600 Weak transcription Ovary ovary
9 chr11:102301200-102320800 Weak transcription Left Ventricle heart
10 chr11:102301400-102316200 Weak transcription Duodenum Mucosa Duodenum
11 chr11:102301400-102316600 Weak transcription NHLF lung
12 chr11:102301400-102319800 Weak transcription Pancreas Pancrea
13 chr11:102301400-102320600 Weak transcription Right Ventricle heart
14 chr11:102301400-102320800 Weak transcription Adipose Nuclei Adipose
15 chr11:102301400-102321000 Weak transcription Stomach Smooth Muscle stomach
16 chr11:102301400-102322400 Weak transcription Spleen Spleen
17 chr11:102301600-102307400 Weak transcription iPS-18 Cell Line embryonic stem cell
18 chr11:102301600-102307600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr11:102301600-102308400 Weak transcription Rectal Smooth Muscle rectum
20 chr11:102301600-102309000 Weak transcription Muscle Satellite Cultured Cells --
21 chr11:102301600-102316600 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr11:102301800-102309200 Weak transcription Colon Smooth Muscle Colon
23 chr11:102301800-102309600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr11:102301800-102316800 Weak transcription HSMMtube muscle
25 chr11:102302400-102307400 Weak transcription Brain Anterior Caudate brain
26 chr11:102302400-102308600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr11:102302400-102309600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
28 chr11:102302400-102309600 ZNF genes & repeats GM12878-XiMat blood
29 chr11:102302400-102318000 Weak transcription Small Intestine intestine
30 chr11:102302600-102307600 Weak transcription Primary T killer memory cells from peripheral blood blood
31 chr11:102302800-102307600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr11:102303000-102306800 Strong transcription Monocytes-CD14+_RO01746 blood
33 chr11:102303800-102309000 Strong transcription HepG2 liver
34 chr11:102304000-102307400 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr11:102304000-102307800 Weak transcription Liver Liver
36 chr11:102304000-102308400 Weak transcription Brain Hippocampus Middle brain
37 chr11:102304000-102308600 Weak transcription Fetal Adrenal Gland Adrenal Gland
38 chr11:102304000-102308800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
39 chr11:102304000-102309000 Weak transcription Fetal Intestine Large intestine
40 chr11:102304000-102309400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr11:102304000-102309400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr11:102304000-102309400 Weak transcription Colonic Mucosa Colon
43 chr11:102304000-102309400 Weak transcription Gastric stomach
44 chr11:102304000-102316400 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr11:102304000-102316600 Weak transcription HMEC breast
46 chr11:102304000-102317000 Weak transcription NH-A brain
47 chr11:102304000-102320600 Weak transcription Fetal Brain Female brain
48 chr11:102304000-102322400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr11:102304200-102307000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr11:102304200-102307800 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015