Variant report

Variant	rs11225244
Chromosome Location	chr11:102278334-102278335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:102278180..102279807-chr11:102281474..102283543,3	K562	blood:
2	chr11:102275664..102278453-chr11:102281044..102282865,2	MCF-7	breast:
3	chr11:102277094..102279342-chr11:102321543..102323728,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152558	Chromatin interaction
ENSG00000255337	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10219215	0.85[CEU][hapmap]
rs1058606	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10895292	0.85[EUR][1000 genomes]
rs10895293	0.85[EUR][1000 genomes]
rs10895296	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11225235	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs11225236	0.85[EUR][1000 genomes]
rs11225237	1.00[CEU][hapmap];0.87[YRI][hapmap];0.85[EUR][1000 genomes]
rs11225242	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11225243	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225251	0.94[EUR][1000 genomes]
rs11547915	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11547916	1.00[EUR][1000 genomes]
rs11601671	1.00[CEU][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes]
rs11603677	0.85[EUR][1000 genomes]
rs11604008	1.00[CEU][hapmap];0.87[YRI][hapmap];0.85[EUR][1000 genomes]
rs11604189	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11604271	0.85[EUR][1000 genomes]
rs11605010	1.00[EUR][1000 genomes]
rs11605066	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11605133	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11605573	0.85[EUR][1000 genomes]
rs11607657	0.98[EUR][1000 genomes]
rs11607908	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12269847	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12271457	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12271900	0.98[EUR][1000 genomes]
rs12274405	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12275185	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12275349	0.85[CEU][hapmap]
rs12277594	1.00[CEU][hapmap];0.87[YRI][hapmap];0.85[EUR][1000 genomes]
rs12277747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12277853	1.00[CEU][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes]
rs12279056	1.00[CEU][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes]
rs12282486	0.85[EUR][1000 genomes]
rs12283885	1.00[CEU][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes]
rs12290033	0.85[EUR][1000 genomes]
rs12291114	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs12293094	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12293834	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12792649	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1317775	1.00[CEU][hapmap]
rs1318199	0.81[EUR][1000 genomes]
rs13377311	0.90[EUR][1000 genomes]
rs1574410	0.81[EUR][1000 genomes]
rs17349689	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17350205	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17350590	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2567752	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35972941	0.81[EUR][1000 genomes]
rs549513	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs57346058	1.00[EUR][1000 genomes]
rs57562739	1.00[EUR][1000 genomes]
rs58250524	0.85[EUR][1000 genomes]
rs60056981	0.98[EUR][1000 genomes]
rs61123589	0.96[EUR][1000 genomes]
rs61334418	1.00[EUR][1000 genomes]
rs679366	1.00[ASN][1000 genomes]
rs7104841	1.00[EUR][1000 genomes]
rs7113906	0.85[EUR][1000 genomes]
rs7114048	0.85[EUR][1000 genomes]
rs7952037	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102246000-102278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:102246200-102281000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:102246200-102281000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:102246200-102281000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:102261800-102281000	Weak transcription	K562	blood
7	chr11:102264400-102279000	Weak transcription	Fetal Brain Male	brain
8	chr11:102264600-102279200	Weak transcription	Ovary	ovary
9	chr11:102264600-102281400	Weak transcription	Right Ventricle	heart
10	chr11:102265000-102287800	Weak transcription	Psoas Muscle	Psoas
11	chr11:102265000-102290800	Weak transcription	Small Intestine	intestine
12	chr11:102265400-102281000	Weak transcription	Pancreas	Pancrea
13	chr11:102266000-102281000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:102267000-102280400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:102268400-102280400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:102270200-102281000	Weak transcription	A549	lung
17	chr11:102271800-102281200	Weak transcription	Fetal Brain Female	brain
18	chr11:102272200-102278600	Weak transcription	Colonic Mucosa	Colon
19	chr11:102272800-102278800	Weak transcription	Fetal Kidney	kidney
20	chr11:102272800-102280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:102272800-102281200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:102272800-102282000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:102273000-102281000	Weak transcription	Left Ventricle	heart
24	chr11:102273000-102282000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:102273000-102288000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:102273000-102302400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:102273200-102280800	Weak transcription	Fetal Heart	heart
28	chr11:102273200-102289800	Weak transcription	NHEK	skin
29	chr11:102273200-102292400	Weak transcription	HUVEC	blood vessel
30	chr11:102273200-102300800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:102273400-102279400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr11:102273600-102280800	Weak transcription	NHDF-Ad	bronchial
33	chr11:102273600-102281400	Weak transcription	NH-A	brain
34	chr11:102273800-102279000	Genic enhancers	Primary T cells fromperipheralblood	blood
35	chr11:102274200-102281200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:102274200-102282800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:102274400-102289600	Weak transcription	HMEC	breast
38	chr11:102274400-102294000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:102274600-102279600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:102274800-102279200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:102274800-102281000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:102274800-102281200	Weak transcription	Placenta	Placenta
43	chr11:102275000-102290600	Weak transcription	Fetal Intestine Large	intestine
44	chr11:102276000-102279600	Enhancers	Brain Substantia Nigra	brain
45	chr11:102276200-102279600	Strong transcription	GM12878-XiMat	blood
46	chr11:102276200-102281400	Strong transcription	Primary B cells from cord blood	blood
47	chr11:102276400-102278400	Strong transcription	Osteobl	bone
48	chr11:102276400-102278600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:102276400-102278600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:102276400-102278600	Genic enhancers	Thymus	Thymus

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