Variant report

Variant	rs679366
Chromosome Location	chr11:102275620-102275621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102265604..102267237-chr11:102273408..102276073,2	K562	blood:
2	chr11:102271373..102273444-chr11:102275358..102277097,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11225242	0.92[ASN][1000 genomes]
rs11225243	1.00[ASN][1000 genomes]
rs11225244	1.00[ASN][1000 genomes]
rs11225247	1.00[ASN][1000 genomes]
rs12277747	0.85[ASN][1000 genomes]
rs2567752	1.00[ASN][1000 genomes]
rs549513	1.00[ASN][1000 genomes]
rs589068	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102245400-102278000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:102246000-102278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:102246200-102281000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:102246200-102281000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:102246200-102281000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:102246800-102277800	Weak transcription	Stomach Mucosa	stomach
8	chr11:102257800-102277800	Strong transcription	Fetal Thymus	thymus
9	chr11:102261800-102281000	Weak transcription	K562	blood
10	chr11:102262000-102277400	Strong transcription	Adipose Nuclei	Adipose
11	chr11:102264000-102277000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:102264400-102276800	Weak transcription	Aorta	Aorta
13	chr11:102264400-102279000	Weak transcription	Fetal Brain Male	brain
14	chr11:102264600-102276800	Weak transcription	Gastric	stomach
15	chr11:102264600-102279200	Weak transcription	Ovary	ovary
16	chr11:102264600-102281400	Weak transcription	Right Ventricle	heart
17	chr11:102264800-102276800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:102265000-102276800	Weak transcription	Lung	lung
19	chr11:102265000-102276800	Weak transcription	Spleen	Spleen
20	chr11:102265000-102287800	Weak transcription	Psoas Muscle	Psoas
21	chr11:102265000-102290800	Weak transcription	Small Intestine	intestine
22	chr11:102265400-102276000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:102265400-102276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:102265400-102281000	Weak transcription	Pancreas	Pancrea
25	chr11:102266000-102281000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:102267000-102280400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:102268200-102276400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:102268400-102280400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:102269200-102277600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:102270000-102276800	Weak transcription	Right Atrium	heart
31	chr11:102270200-102281000	Weak transcription	A549	lung
32	chr11:102271800-102281200	Weak transcription	Fetal Brain Female	brain
33	chr11:102272200-102276800	Weak transcription	NHLF	lung
34	chr11:102272200-102278600	Weak transcription	Colonic Mucosa	Colon
35	chr11:102272600-102275800	Strong transcription	Thymus	Thymus
36	chr11:102272600-102277200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
37	chr11:102272600-102278000	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:102272800-102278800	Weak transcription	Fetal Kidney	kidney
39	chr11:102272800-102280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:102272800-102281200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:102272800-102282000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:102273000-102276600	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:102273000-102276600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:102273000-102277800	Weak transcription	Esophagus	oesophagus
45	chr11:102273000-102281000	Weak transcription	Left Ventricle	heart
46	chr11:102273000-102282000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:102273000-102288000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr11:102273000-102302400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:102273200-102280800	Weak transcription	Fetal Heart	heart
50	chr11:102273200-102289800	Weak transcription	NHEK	skin

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