Variant report

Variant	rs11605010
Chromosome Location	chr11:102266343-102266344
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102265604..102267237-chr11:102273408..102276073,2	K562	blood:
2	chr11:102257797..102259465-chr11:102265476..102267550,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10219215	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap]
rs1058606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895292	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895293	0.85[EUR][1000 genomes]
rs10895296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11225222	1.00[ASN][1000 genomes]
rs11225229	1.00[ASN][1000 genomes]
rs11225235	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225236	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225242	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11225243	1.00[EUR][1000 genomes]
rs11225244	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11225247	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11225251	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11501342	1.00[ASN][1000 genomes]
rs11501343	1.00[ASN][1000 genomes]
rs11501344	1.00[ASN][1000 genomes]
rs11547915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];0.90[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11547916	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603677	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604271	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605087	1.00[ASN][1000 genomes]
rs11605133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605573	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605915	1.00[ASN][1000 genomes]
rs11607214	1.00[ASN][1000 genomes]
rs11607657	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270109	1.00[ASN][1000 genomes]
rs12271457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271900	0.98[EUR][1000 genomes]
rs12273698	1.00[ASN][1000 genomes]
rs12274405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275349	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];1.00[ASN][1000 genomes]
rs12277594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277747	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12277853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282486	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290033	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291114	1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes]
rs12293834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275850	1.00[ASN][1000 genomes]
rs12792649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290044	1.00[ASN][1000 genomes]
rs1317775	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1318199	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377311	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1574410	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349689	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1943781	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2436036	1.00[CHB][hapmap]
rs2510491	1.00[ASN][1000 genomes]
rs34104132	1.00[ASN][1000 genomes]
rs34296997	1.00[ASN][1000 genomes]
rs34740624	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs35457182	1.00[ASN][1000 genomes]
rs35569122	1.00[ASN][1000 genomes]
rs35623064	1.00[ASN][1000 genomes]
rs35972941	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484068	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs485020	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs525305	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs531350	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs57346058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57562739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577850	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs58250524	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60056981	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61123589	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61334418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895370	1.00[ASN][1000 genomes]
rs61895375	1.00[ASN][1000 genomes]
rs61895376	1.00[ASN][1000 genomes]
rs637708	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs660908	1.00[CHB][hapmap]
rs670334	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7104841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113906	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114048	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102245400-102278000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:102245600-102275600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:102245800-102275000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:102246000-102278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:102246200-102267000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:102246200-102274400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:102246200-102281000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:102246200-102281000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:102246200-102281000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:102246800-102277800	Weak transcription	Stomach Mucosa	stomach
12	chr11:102247400-102275400	Strong transcription	Primary B cells from cord blood	blood
13	chr11:102251000-102268400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:102251200-102267400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:102251400-102271200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:102254000-102268000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:102254600-102266400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:102254600-102267400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:102254800-102267400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:102255000-102267000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:102255600-102274800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:102256200-102267800	Weak transcription	Fetal Heart	heart
23	chr11:102257800-102267000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:102257800-102267200	Strong transcription	Primary T cells from cord blood	blood
25	chr11:102257800-102277800	Strong transcription	Fetal Thymus	thymus
26	chr11:102258200-102266600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:102258400-102267600	Strong transcription	Osteobl	bone
28	chr11:102259800-102266400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:102260000-102267000	Strong transcription	Fetal Intestine Small	intestine
30	chr11:102260200-102267800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:102260400-102268800	Weak transcription	HMEC	breast
32	chr11:102261200-102275000	Strong transcription	Fetal Intestine Large	intestine
33	chr11:102261200-102275400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:102261400-102267600	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr11:102261400-102274600	Strong transcription	Dnd41	blood
36	chr11:102261400-102275400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:102261600-102274800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:102261800-102267000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:102261800-102267000	Strong transcription	Thymus	Thymus
40	chr11:102261800-102269200	Strong transcription	Placenta	Placenta
41	chr11:102261800-102272800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr11:102261800-102272800	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:102261800-102273400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:102261800-102281000	Weak transcription	K562	blood
45	chr11:102262000-102267800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:102262000-102273000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr11:102262000-102274800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:102262000-102277400	Strong transcription	Adipose Nuclei	Adipose
49	chr11:102262200-102266800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:102262200-102272800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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