Variant report

Variant	rs11605066
Chromosome Location	chr11:102296688-102296689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102296686..102299425-chr11:102321906..102324629,2	MCF-7	breast:
2	chr11:102291782..102293668-chr11:102295422..102297463,2	K562	blood:

Variant related genes	Relation type
ENSG00000152558	Chromatin interaction
ENSG00000255337	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10219215	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs1058606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895292	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895293	0.85[EUR][1000 genomes]
rs10895296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10895299	1.00[AFR][1000 genomes]
rs11225222	1.00[ASN][1000 genomes]
rs11225229	1.00[ASN][1000 genomes]
rs11225235	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225236	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225242	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11225243	1.00[EUR][1000 genomes]
rs11225244	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11225247	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11225251	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225266	1.00[AFR][1000 genomes]
rs11225278	1.00[AFR][1000 genomes]
rs11225286	1.00[AFR][1000 genomes]
rs11225287	1.00[AFR][1000 genomes]
rs11225290	1.00[AFR][1000 genomes]
rs11225297	1.00[AFR][1000 genomes]
rs11225299	1.00[AFR][1000 genomes]
rs11225300	1.00[AFR][1000 genomes]
rs11501342	1.00[ASN][1000 genomes]
rs11501343	1.00[ASN][1000 genomes]
rs11501344	1.00[ASN][1000 genomes]
rs11547915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11547916	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603677	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604189	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604271	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605087	1.00[ASN][1000 genomes]
rs11605133	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605573	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605915	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11607214	1.00[ASN][1000 genomes]
rs11607657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184413	1.00[AFR][1000 genomes]
rs12269847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270109	1.00[ASN][1000 genomes]
rs12271457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271900	0.98[EUR][1000 genomes]
rs12273698	1.00[ASN][1000 genomes]
rs12274405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275349	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12277594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277747	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12277853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282486	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290033	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291114	1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs12293834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275850	1.00[ASN][1000 genomes]
rs12792649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290044	1.00[ASN][1000 genomes]
rs1317775	1.00[CEU][hapmap]
rs1318199	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377311	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1574410	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098230	1.00[AFR][1000 genomes]
rs17349689	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17769668	1.00[AFR][1000 genomes]
rs1943781	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2436036	1.00[CHB][hapmap]
rs2510491	1.00[ASN][1000 genomes]
rs34104132	1.00[ASN][1000 genomes]
rs34296997	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34740624	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35457182	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35569122	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35623064	1.00[ASN][1000 genomes]
rs35972941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484068	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs485020	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs525305	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs531350	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs57346058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57562739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577850	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs58250524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60056981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61123589	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61334418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895370	1.00[ASN][1000 genomes]
rs61895375	1.00[ASN][1000 genomes]
rs61895376	1.00[ASN][1000 genomes]
rs637708	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs660908	1.00[CHB][hapmap]
rs670334	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7104841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113906	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114048	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102273000-102302400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:102273200-102300800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:102277200-102297000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:102278600-102300600	Weak transcription	Esophagus	oesophagus
5	chr11:102281400-102297600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:102281600-102300000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:102281800-102298000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:102282200-102303400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:102283000-102300600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:102283200-102300400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:102284400-102299600	Weak transcription	Right Atrium	heart
12	chr11:102284400-102302200	Weak transcription	Aorta	Aorta
13	chr11:102284600-102308600	Weak transcription	Lung	lung
14	chr11:102286400-102297800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:102288200-102299000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr11:102288400-102297000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr11:102288400-102298000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:102288600-102300600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:102288800-102300400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr11:102289600-102297600	Enhancers	Brain Substantia Nigra	brain
21	chr11:102289600-102297800	Weak transcription	Fetal Lung	lung
22	chr11:102289800-102297400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:102289800-102297800	Enhancers	Brain Hippocampus Middle	brain
24	chr11:102289800-102298000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:102290200-102297400	Enhancers	Brain Cingulate Gyrus	brain
26	chr11:102290600-102298200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:102290600-102301000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:102291000-102298200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:102291000-102299600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:102291000-102301600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:102291000-102303200	Weak transcription	HMEC	breast
32	chr11:102291200-102299000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr11:102291200-102302400	Weak transcription	NHEK	skin
34	chr11:102291600-102299600	Weak transcription	Small Intestine	intestine
35	chr11:102291600-102301200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:102291600-102302600	Weak transcription	A549	lung
37	chr11:102291600-102307800	Weak transcription	K562	blood
38	chr11:102291800-102300600	Weak transcription	Fetal Intestine Small	intestine
39	chr11:102292000-102297800	Weak transcription	GM12878-XiMat	blood
40	chr11:102292200-102299600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:102292400-102297000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:102292600-102297000	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr11:102292600-102299600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:102292600-102299600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:102292800-102300400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:102293000-102299600	Weak transcription	HSMMtube	muscle
47	chr11:102293000-102316000	Weak transcription	HUVEC	blood vessel
48	chr11:102293200-102302200	Weak transcription	Fetal Intestine Large	intestine
49	chr11:102293200-102303200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr11:102293600-102297600	Enhancers	Brain Anterior Caudate	brain

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