Variant report

Variant	rs637708
Chromosome Location	chr11:102229208-102229209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:102217363..102222814-chr11:102227902..102233521,10	K562	blood:
2	chr11:102217363..102223592-chr11:102226307..102231269,9	K562	blood:
3	chr11:102222933..102225274-chr11:102227977..102229731,2	K562	blood:
4	chr11:102223774..102225274-chr11:102227788..102229477,2	K562	blood:

Variant related genes	Relation type
ENSG00000110330	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10219215	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1058606	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10895292	1.00[ASN][1000 genomes]
rs10895296	1.00[CHB][hapmap]
rs11225222	1.00[ASN][1000 genomes]
rs11225229	1.00[ASN][1000 genomes]
rs11225235	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11225236	1.00[ASN][1000 genomes]
rs11225237	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11225251	1.00[ASN][1000 genomes]
rs11501342	1.00[ASN][1000 genomes]
rs11501343	1.00[ASN][1000 genomes]
rs11501344	1.00[ASN][1000 genomes]
rs11547915	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11547916	1.00[ASN][1000 genomes]
rs11601671	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11603677	1.00[ASN][1000 genomes]
rs11604008	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11604189	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11604271	1.00[ASN][1000 genomes]
rs11605010	1.00[ASN][1000 genomes]
rs11605066	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11605087	1.00[ASN][1000 genomes]
rs11605133	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11605573	1.00[ASN][1000 genomes]
rs11605915	1.00[ASN][1000 genomes]
rs11607214	1.00[ASN][1000 genomes]
rs11607657	1.00[ASN][1000 genomes]
rs11607908	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12269847	1.00[ASN][1000 genomes]
rs12270109	1.00[ASN][1000 genomes]
rs12271457	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12273698	1.00[ASN][1000 genomes]
rs12274405	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12275185	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12275349	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12277594	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12277853	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12279056	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12282486	1.00[ASN][1000 genomes]
rs12283885	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12290033	1.00[ASN][1000 genomes]
rs12291114	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12293094	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12293834	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1275850	1.00[ASN][1000 genomes]
rs12792649	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12794864	0.90[AMR][1000 genomes]
rs1290044	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317775	1.00[CHD][hapmap]
rs1318199	1.00[ASN][1000 genomes]
rs13377311	1.00[ASN][1000 genomes]
rs1574410	1.00[ASN][1000 genomes]
rs17349689	1.00[ASN][1000 genomes]
rs17350205	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17350590	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1943781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436036	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs2510491	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33945990	0.90[AMR][1000 genomes]
rs34104132	1.00[ASN][1000 genomes]
rs34296997	1.00[ASN][1000 genomes]
rs34740624	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35457182	1.00[ASN][1000 genomes]
rs35569122	1.00[ASN][1000 genomes]
rs35623064	1.00[ASN][1000 genomes]
rs35972941	1.00[ASN][1000 genomes]
rs484068	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs485020	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs525305	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs531350	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs57346058	1.00[ASN][1000 genomes]
rs57562739	1.00[ASN][1000 genomes]
rs577850	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs58250524	1.00[ASN][1000 genomes]
rs589533	0.83[CEU][hapmap]
rs61123589	1.00[ASN][1000 genomes]
rs61334418	1.00[ASN][1000 genomes]
rs61895370	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61895375	1.00[ASN][1000 genomes]
rs61895376	1.00[ASN][1000 genomes]
rs660908	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs670334	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7104841	1.00[ASN][1000 genomes]
rs7113906	1.00[ASN][1000 genomes]
rs7114048	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102218800-102231600	Weak transcription	Spleen	Spleen
2	chr11:102219000-102231600	Weak transcription	Gastric	stomach
3	chr11:102219000-102231800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:102219200-102230200	Weak transcription	Right Ventricle	heart
5	chr11:102219200-102231600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:102219200-102231600	Weak transcription	Esophagus	oesophagus
7	chr11:102219200-102231800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:102219200-102231800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:102219200-102234400	Weak transcription	Psoas Muscle	Psoas
10	chr11:102219200-102234600	Weak transcription	Ovary	ovary
11	chr11:102219200-102238400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:102219200-102239200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:102219400-102231800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:102219600-102229600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:102219600-102230400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:102219600-102231600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:102219800-102229600	Weak transcription	Primary B cells from cord blood	blood
18	chr11:102220000-102229600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
20	chr11:102220800-102229400	Weak transcription	Brain Anterior Caudate	brain
21	chr11:102220800-102231400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:102220800-102240000	Strong transcription	Liver	Liver
23	chr11:102221000-102230200	Weak transcription	Small Intestine	intestine
24	chr11:102221000-102231600	Weak transcription	Aorta	Aorta
25	chr11:102221200-102229600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:102221200-102230200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr11:102221200-102231000	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:102221200-102231400	Weak transcription	Brain Angular Gyrus	brain
29	chr11:102221200-102239800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:102221400-102230400	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:102221400-102233200	Weak transcription	HSMMtube	muscle
32	chr11:102221600-102230200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:102221800-102229400	Weak transcription	HMEC	breast
34	chr11:102221800-102230400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:102221800-102231600	Weak transcription	NHLF	lung
36	chr11:102222200-102229600	Weak transcription	Adipose Nuclei	Adipose
37	chr11:102222200-102230200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:102222200-102230400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr11:102222200-102234600	Weak transcription	K562	blood
40	chr11:102222400-102231400	Weak transcription	Pancreas	Pancrea
41	chr11:102222800-102229400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:102223400-102231600	Weak transcription	Colonic Mucosa	Colon
43	chr11:102223800-102239800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr11:102224000-102231600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:102224400-102230800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:102224800-102229400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:102224800-102230200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr11:102224800-102231600	Weak transcription	Left Ventricle	heart
49	chr11:102225000-102231600	Weak transcription	Lung	lung
50	chr11:102225200-102230400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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