Variant report

Variant	rs670334
Chromosome Location	chr11:102308440-102308441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:102306119..102309748-chr11:102314696..102317060,3	K562	blood:
2	chr11:102306851..102309748-chr11:102315391..102317524,3	K562	blood:
3	chr11:102234586..102236532-chr11:102307428..102308974,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10219215	1.00[CHB][hapmap]
rs1058606	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10895292	1.00[ASN][1000 genomes]
rs10895296	1.00[CHB][hapmap]
rs11225222	1.00[ASN][1000 genomes]
rs11225229	1.00[ASN][1000 genomes]
rs11225235	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11225236	1.00[ASN][1000 genomes]
rs11225237	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11225251	1.00[ASN][1000 genomes]
rs11501342	1.00[ASN][1000 genomes]
rs11501343	1.00[ASN][1000 genomes]
rs11501344	1.00[ASN][1000 genomes]
rs11547915	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11547916	1.00[ASN][1000 genomes]
rs11601671	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11603677	1.00[ASN][1000 genomes]
rs11604008	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11604189	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11604271	1.00[ASN][1000 genomes]
rs11605010	1.00[ASN][1000 genomes]
rs11605066	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11605087	1.00[ASN][1000 genomes]
rs11605133	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11605573	1.00[ASN][1000 genomes]
rs11605915	1.00[ASN][1000 genomes]
rs11607214	1.00[ASN][1000 genomes]
rs11607657	1.00[ASN][1000 genomes]
rs11607908	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12269847	1.00[ASN][1000 genomes]
rs12270109	1.00[ASN][1000 genomes]
rs12271457	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12273698	1.00[ASN][1000 genomes]
rs12274405	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12275185	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12275349	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12277594	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12277853	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12279056	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12282486	1.00[ASN][1000 genomes]
rs12283885	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12290033	1.00[ASN][1000 genomes]
rs12291114	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12293094	1.00[CHB][hapmap]
rs12293834	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1275850	1.00[ASN][1000 genomes]
rs12792649	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1290044	1.00[ASN][1000 genomes]
rs1318199	1.00[ASN][1000 genomes]
rs13377311	1.00[ASN][1000 genomes]
rs1574410	1.00[ASN][1000 genomes]
rs17349689	1.00[ASN][1000 genomes]
rs17350205	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17350590	1.00[CHB][hapmap]
rs1943781	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2436036	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.86[LWK][hapmap];0.80[MKK][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2509683	1.00[MEX][hapmap]
rs2510491	1.00[ASN][1000 genomes]
rs2567752	0.83[CEU][hapmap];0.92[GIH][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs34104132	1.00[ASN][1000 genomes]
rs34296997	1.00[ASN][1000 genomes]
rs34740624	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35457182	1.00[ASN][1000 genomes]
rs35569122	1.00[ASN][1000 genomes]
rs35623064	1.00[ASN][1000 genomes]
rs35972941	1.00[ASN][1000 genomes]
rs484068	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs485020	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs523356	1.00[MEX][hapmap]
rs525305	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs531350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549513	0.85[CEU][hapmap];0.92[GIH][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs57346058	1.00[ASN][1000 genomes]
rs57562739	1.00[ASN][1000 genomes]
rs577850	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58250524	1.00[ASN][1000 genomes]
rs589068	0.91[EUR][1000 genomes]
rs589533	0.91[CEU][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61123589	1.00[ASN][1000 genomes]
rs61334418	1.00[ASN][1000 genomes]
rs61895370	1.00[ASN][1000 genomes]
rs61895375	1.00[ASN][1000 genomes]
rs61895376	1.00[ASN][1000 genomes]
rs637708	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs660908	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[LWK][hapmap];0.90[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs670314	1.00[MEX][hapmap]
rs7104841	1.00[ASN][1000 genomes]
rs7113906	1.00[ASN][1000 genomes]
rs7114048	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102284600-102308600	Weak transcription	Lung	lung
2	chr11:102293000-102316000	Weak transcription	HUVEC	blood vessel
3	chr11:102298200-102316000	Weak transcription	Fetal Lung	lung
4	chr11:102300400-102319800	Weak transcription	Fetal Kidney	kidney
5	chr11:102300800-102316600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:102300800-102320600	Weak transcription	Ovary	ovary
7	chr11:102301200-102320800	Weak transcription	Left Ventricle	heart
8	chr11:102301400-102316200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:102301400-102316600	Weak transcription	NHLF	lung
10	chr11:102301400-102319800	Weak transcription	Pancreas	Pancrea
11	chr11:102301400-102320600	Weak transcription	Right Ventricle	heart
12	chr11:102301400-102320800	Weak transcription	Adipose Nuclei	Adipose
13	chr11:102301400-102321000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:102301400-102322400	Weak transcription	Spleen	Spleen
15	chr11:102301600-102309000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:102301600-102316600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:102301800-102309200	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:102301800-102309600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:102301800-102316800	Weak transcription	HSMMtube	muscle
20	chr11:102302400-102308600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:102302400-102309600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:102302400-102309600	ZNF genes & repeats	GM12878-XiMat	blood
23	chr11:102302400-102318000	Weak transcription	Small Intestine	intestine
24	chr11:102303800-102309000	Strong transcription	HepG2	liver
25	chr11:102304000-102308600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:102304000-102308800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:102304000-102309000	Weak transcription	Fetal Intestine Large	intestine
28	chr11:102304000-102309400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:102304000-102309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:102304000-102309400	Weak transcription	Colonic Mucosa	Colon
31	chr11:102304000-102309400	Weak transcription	Gastric	stomach
32	chr11:102304000-102316400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:102304000-102316600	Weak transcription	HMEC	breast
34	chr11:102304000-102317000	Weak transcription	NH-A	brain
35	chr11:102304000-102320600	Weak transcription	Fetal Brain Female	brain
36	chr11:102304000-102322400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:102304200-102308600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:102304200-102308600	Weak transcription	Fetal Stomach	stomach
39	chr11:102304200-102309200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:102304200-102309400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:102304200-102309400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:102304200-102309400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:102304200-102322000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr11:102304400-102316000	Weak transcription	NHEK	skin
45	chr11:102304600-102308600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:102304600-102308600	Weak transcription	Brain Germinal Matrix	brain
47	chr11:102304600-102309400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:102304600-102309600	Strong transcription	Primary hematopoietic stem cells	blood
49	chr11:102304600-102310200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:102304800-102309800	Strong transcription	Primary B cells from peripheral blood	blood

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