The 2.0 version of rSNPBase

Variant report

Variant rs6678394
Chromosome Location chr1:67028335-67028336
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:67000800-67029800 Weak transcription Primary hematopoietic stem cells blood
2 chr1:67010000-67029000 Weak transcription Fetal Kidney kidney
3 chr1:67011800-67029800 Weak transcription Fetal Brain Male brain
4 chr1:67019000-67028600 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr1:67022400-67028400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:67022400-67028400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:67023000-67028400 Weak transcription NHEK skin
8 chr1:67023400-67028600 Weak transcription Brain Anterior Caudate brain
9 chr1:67023400-67028800 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr1:67023800-67028800 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr1:67025000-67031600 Enhancers Fetal Lung lung
12 chr1:67025600-67028800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr1:67026000-67028800 Weak transcription Brain Substantia Nigra brain
14 chr1:67026000-67029000 Weak transcription Brain Inferior Temporal Lobe brain
15 chr1:67027200-67029600 Enhancers Aorta Aorta
16 chr1:67027200-67030200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:67027200-67032000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
18 chr1:67027400-67028800 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:67027400-67028800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:67027400-67031400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:67027600-67028800 Enhancers Hela-S3 cervix
22 chr1:67027600-67028800 Enhancers Osteobl bone
23 chr1:67027800-67028800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:67027800-67029200 Enhancers Duodenum Smooth Muscle Duodenum
25 chr1:67027800-67029600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr1:67027800-67029600 Enhancers Brain Cingulate Gyrus brain
27 chr1:67028000-67028800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr1:67028000-67028800 Enhancers HUVEC blood vessel
29 chr1:67028000-67029600 Enhancers Brain Hippocampus Middle brain
30 chr1:67028000-67029800 Enhancers Fetal Heart heart
31 chr1:67028200-67028400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
32 chr1:67028200-67028600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:67028200-67028600 Enhancers Brain Germinal Matrix brain
34 chr1:67028200-67028800 Enhancers HSMM muscle
35 chr1:67028200-67028800 Enhancers NH-A brain
36 chr1:67028200-67029200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:67028200-67029200 Enhancers Rectal Mucosa Donor 31 rectum
38 chr1:67028200-67029200 Flanking Active TSS NHLF lung
39 chr1:67028200-67029400 Enhancers Breast Myoepithelial Primary Cells Breast
40 chr1:67028200-67029400 Enhancers Left Ventricle heart
41 chr1:67028200-67029600 Enhancers HUES48 Cell Line embryonic stem cell
42 chr1:67028200-67029600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:67028200-67030000 Flanking Active TSS Muscle Satellite Cultured Cells --
44 chr1:67028200-67030000 Enhancers Brain Angular Gyrus brain
45 chr1:67028200-67030000 Enhancers Placenta Placenta
46 chr1:67028200-67030000 Flanking Active TSS NHDF-Ad bronchial
47 chr1:67028200-67030200 Enhancers ES-I3 Cell Line embryonic stem cell
48 chr1:67028200-67030200 Enhancers Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015