Variant report

Variant	rs72918426
Chromosome Location	chr1:67066632-67066633
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67064848..67066944-chr1:67071232..67073081,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11208917	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11208918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11208919	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11810610	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11810644	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11810679	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11811511	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11811895	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11811921	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12058115	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12061081	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12061222	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12070181	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12077193	1.00[ASN][1000 genomes]
rs12079953	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12082341	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12091274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12092996	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12117202	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4655635	1.00[ASN][1000 genomes]
rs6678394	0.87[ASN][1000 genomes]
rs72916344	0.87[ASN][1000 genomes]
rs72916400	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72918406	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72918430	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72918438	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7535237	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003016	chr1:67043120-67067119	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67052200-67070800	Weak transcription	Fetal Heart	heart
2	chr1:67055400-67073000	Weak transcription	Left Ventricle	heart
3	chr1:67057800-67073000	Weak transcription	Aorta	Aorta
4	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:67059200-67074400	Weak transcription	Fetal Lung	lung
6	chr1:67063400-67068800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:67064400-67074600	Weak transcription	Right Ventricle	heart
8	chr1:67065600-67068200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:67065600-67071000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:67065600-67077000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:67065800-67071000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:67065800-67071400	Weak transcription	Osteobl	bone
13	chr1:67065800-67078800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:67065800-67082800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:67066200-67083800	Weak transcription	NHLF	lung
16	chr1:67066400-67067400	Weak transcription	NHDF-Ad	bronchial
17	chr1:67066400-67067600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:67066400-67089600	Weak transcription	Brain Angular Gyrus	brain
19	chr1:67066600-67066800	Enhancers	Brain Substantia Nigra	brain
20	chr1:67066600-67067600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:67066600-67071200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:67066600-67073600	Weak transcription	Brain Anterior Caudate	brain
23	chr1:67066600-67077800	Weak transcription	Brain Hippocampus Middle	brain

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