Variant report

Variant	rs6678496
Chromosome Location	chr1:85338805-85338806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17116749	1.00[ASN][1000 genomes]
rs17116839	1.00[ASN][1000 genomes]
rs17116969	0.92[EUR][1000 genomes]
rs9730423	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830448	chr1:85294094-85491110	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv470724	chr1:85334788-85585260	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv462383	chr1:85334788-85594466	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv546700	chr1:85334788-85594466	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv947434	chr1:85334915-85594135	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85313600-85357200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:85320600-85354800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:85321000-85342800	Weak transcription	Right Atrium	heart
4	chr1:85322800-85355800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:85324400-85342000	Weak transcription	Left Ventricle	heart
6	chr1:85327400-85357400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:85329200-85345800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:85329600-85343400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:85331400-85347400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:85331600-85343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:85331600-85350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:85332200-85339800	Weak transcription	NHEK	skin
13	chr1:85336200-85341600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:85336200-85346200	Weak transcription	HMEC	breast
15	chr1:85336400-85340400	Enhancers	Fetal Lung	lung
16	chr1:85337800-85348600	Weak transcription	NHDF-Ad	bronchial
17	chr1:85338000-85339000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr1:85338200-85342600	Weak transcription	Fetal Heart	heart
19	chr1:85338600-85340200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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