Variant report

Variant	rs9730423
Chromosome Location	chr1:85333796-85333797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13374798	0.81[EUR][1000 genomes]
rs17116749	0.89[ASN][1000 genomes]
rs17116839	0.89[ASN][1000 genomes]
rs6678496	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830448	chr1:85294094-85491110	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85313600-85357200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:85315600-85336400	Weak transcription	Right Ventricle	heart
3	chr1:85319400-85336400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:85320600-85354800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:85321000-85342800	Weak transcription	Right Atrium	heart
6	chr1:85322800-85355800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:85324400-85342000	Weak transcription	Left Ventricle	heart
8	chr1:85326200-85335000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:85327400-85357400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:85329000-85335800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:85329200-85345800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:85329600-85343400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:85330400-85335400	Weak transcription	HMEC	breast
14	chr1:85330800-85333800	Weak transcription	Fetal Heart	heart
15	chr1:85331400-85347400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr1:85331600-85343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:85331600-85350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:85332200-85335400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:85332200-85339800	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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