Variant report

Variant	rs6679850
Chromosome Location	chr1:57480246-57480247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13374012	1.00[MEX][hapmap]
rs155306	1.00[MEX][hapmap]
rs6684103	1.00[MEX][hapmap]
rs6684287	1.00[MEX][hapmap]
rs6692425	1.00[MEX][hapmap]
rs6697608	1.00[MEX][hapmap]
rs7523415	1.00[MEX][hapmap]
rs856842	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428752	chr1:57455083-57605082	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57457800-57480400	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57460400-57483000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:57463800-57482200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:57471200-57482600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:57472600-57484400	Weak transcription	Fetal Brain Male	brain
6	chr1:57474200-57490200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:57475600-57480800	Weak transcription	Fetal Brain Female	brain
8	chr1:57476000-57482400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:57476200-57480400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:57477600-57490200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:57479400-57487000	Weak transcription	Fetal Intestine Large	intestine
12	chr1:57479800-57481000	Weak transcription	Ovary	ovary
13	chr1:57479800-57482800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:57479800-57484800	Weak transcription	Fetal Heart	heart
15	chr1:57480000-57484400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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