Variant report

Variant	rs6692425
Chromosome Location	chr1:57363834-57363835
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12096073	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13374012	1.00[MEX][hapmap]
rs1999133	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61350393	1.00[AMR][1000 genomes]
rs6661831	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6662705	1.00[AMR][1000 genomes]
rs6670243	1.00[AMR][1000 genomes]
rs6679850	1.00[MEX][hapmap]
rs6684103	1.00[MEX][hapmap]
rs6684287	1.00[MEX][hapmap]
rs6697608	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6703039	1.00[AMR][1000 genomes]
rs7523415	1.00[MEX][hapmap]
rs856842	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57360400-57364400	Enhancers	Liver	Liver
2	chr1:57361400-57364200	Enhancers	Pancreas	Pancrea
3	chr1:57362000-57364600	Enhancers	Gastric	stomach
4	chr1:57362200-57365800	Enhancers	HepG2	liver
5	chr1:57362400-57364000	Enhancers	Lung	lung
6	chr1:57362400-57364200	Enhancers	Fetal Intestine Small	intestine
7	chr1:57362400-57369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:57363000-57364000	Enhancers	Right Atrium	heart
9	chr1:57363000-57364000	Enhancers	NHDF-Ad	bronchial
10	chr1:57363000-57364400	Enhancers	Left Ventricle	heart
11	chr1:57363200-57364200	Enhancers	Duodenum Mucosa	Duodenum
12	chr1:57363600-57364000	Enhancers	Hela-S3	cervix
13	chr1:57363600-57364600	Enhancers	Fetal Brain Male	brain
14	chr1:57363800-57364000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr1:57363800-57364600	Enhancers	Stomach Mucosa	stomach
16	chr1:57363800-57365200	Weak transcription	Fetal Intestine Large	intestine
17	chr1:57363800-57367200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:57363800-57367400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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