Variant report

Variant	rs61350393
Chromosome Location	chr1:57374753-57374754
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57369433..57371881-chr1:57374714..57376933,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12096073	1.00[AMR][1000 genomes]
rs1999133	1.00[AMR][1000 genomes]
rs6661831	1.00[AMR][1000 genomes]
rs6662705	1.00[AMR][1000 genomes]
rs6670243	1.00[AMR][1000 genomes]
rs6692425	1.00[AMR][1000 genomes]
rs6697608	1.00[AMR][1000 genomes]
rs6703039	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57364200-57375600	Weak transcription	Pancreas	Pancrea
2	chr1:57364600-57376200	Weak transcription	Stomach Mucosa	stomach
3	chr1:57367200-57378400	Enhancers	Liver	Liver
4	chr1:57371000-57376200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:57371800-57376000	Weak transcription	Gastric	stomach
6	chr1:57372800-57377800	Enhancers	Fetal Intestine Large	intestine
7	chr1:57373000-57376000	Enhancers	HepG2	liver
8	chr1:57373200-57377800	Enhancers	Fetal Intestine Small	intestine
9	chr1:57373600-57376000	Enhancers	Duodenum Mucosa	Duodenum
10	chr1:57373600-57377200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:57373600-57377800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:57373800-57377800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:57373800-57377800	Enhancers	NHDF-Ad	bronchial
14	chr1:57374000-57375400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:57374000-57377000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:57374400-57374800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:57374400-57374800	Enhancers	NHLF	lung
18	chr1:57374400-57376600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:57374400-57377200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:57374600-57374800	Enhancers	Psoas Muscle	Psoas
21	chr1:57374600-57374800	Enhancers	Small Intestine	intestine
22	chr1:57374600-57376600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr1:57374600-57377600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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