Variant report

Variant	rs6670243
Chromosome Location	chr1:57361613-57361614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12096073	1.00[AMR][1000 genomes]
rs1999133	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61350393	1.00[AMR][1000 genomes]
rs6661831	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6662705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6692425	1.00[AMR][1000 genomes]
rs6697608	1.00[AMR][1000 genomes]
rs6703039	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57359600-57362400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:57360400-57362000	Weak transcription	Fetal Intestine Large	intestine
3	chr1:57360400-57362200	Weak transcription	HepG2	liver
4	chr1:57360400-57364400	Enhancers	Liver	Liver
5	chr1:57361400-57364200	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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