Variant report
| Variant | rs6680551 |
|---|---|
| Chromosome Location | chr1:95567854-95567855 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:95566799..95569108-chr1:95574086..95576514,2 | K562 | blood: | |
| 2 | chr1:95566404..95569309-chr1:95582232..95584413,3 | K562 | blood: | |
| 3 | chr1:95538014..95540644-chr1:95567709..95569677,2 | K562 | blood: | |
| 4 | chr1:95561720..95565038-chr1:95567482..95569878,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000271092 | Chromatin interaction |
| ENSG00000172339 | Chromatin interaction |
| ENSG00000152078 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10465759 | 1.00[CEU][hapmap];0.84[TSI][hapmap] |
| rs11801110 | 1.00[CEU][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs34850224 | 0.92[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs34923964 | 0.84[AFR][1000 genomes] |
| rs3890785 | 1.00[CEU][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs4300274 | 0.84[AFR][1000 genomes] |
| rs4387224 | 0.84[AFR][1000 genomes] |
| rs4517398 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4540701 | 0.84[AFR][1000 genomes] |
| rs4615892 | 0.86[AFR][1000 genomes] |
| rs6674467 | 1.00[CEU][hapmap] |
| rs6678809 | 0.81[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs6684137 | 1.00[CEU][hapmap];0.88[LWK][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];0.88[YRI][hapmap] |
| rs6689195 | 0.81[AFR][1000 genomes] |
| rs6697256 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6704022 | 0.90[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs71654404 | 0.82[AFR][1000 genomes] |
| rs71654405 | 0.84[AFR][1000 genomes] |
| rs71654406 | 0.84[AFR][1000 genomes] |
| rs71654407 | 0.84[AFR][1000 genomes] |
| rs71654408 | 0.84[AFR][1000 genomes] |
| rs7417186 | 0.84[AFR][1000 genomes] |
| rs859040 | 0.85[CEU][hapmap] |
| rs864553 | 0.85[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830636 | chr1:95495849-95703126 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
