Variant report

Variant	rs6704022
Chromosome Location	chr1:95557408-95557409
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10465759	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11165297	0.83[AMR][1000 genomes]
rs11801110	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12239887	0.88[ASN][1000 genomes]
rs17112857	0.83[ASN][1000 genomes]
rs2391390	0.80[ASN][1000 genomes]
rs34726676	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34850224	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34923964	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35578830	0.89[ASN][1000 genomes]
rs3890785	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4300274	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4387224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4517398	0.87[EUR][1000 genomes]
rs4540701	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4615892	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55902261	0.84[ASN][1000 genomes]
rs55911502	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60846886	0.84[ASN][1000 genomes]
rs6662345	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6671842	0.83[AMR][1000 genomes]
rs6672635	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6674467	0.98[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6678809	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6679106	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6680551	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6684137	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6687351	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6689195	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6697256	0.87[EUR][1000 genomes]
rs6698894	0.83[AMR][1000 genomes]
rs71654403	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs71654404	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs71654405	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71654406	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71654407	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71654408	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7417186	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95551800-95557800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:95554200-95558400	Weak transcription	HepG2	liver
3	chr1:95554200-95564000	Weak transcription	Osteobl	bone
4	chr1:95555600-95558600	Weak transcription	A549	lung

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