Variant report

Variant	rs6687351
Chromosome Location	chr1:95539705-95539706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95539591..95541319-chr1:95541795..95543723,2	K562	blood:
2	chr1:95537299..95540042-chr1:95699496..95701047,2	K562	blood:
3	chr1:95536810..95539827-chr1:95698878..95701315,3	K562	blood:
4	chr1:95538593..95540251-chr1:95544538..95546428,2	K562	blood:
5	chr1:95539210..95541346-chr1:95694929..95697807,2	K562	blood:

Variant related genes	Relation type
ENSG00000122481	Chromatin interaction
ENSG00000226026	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10465759	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11165297	0.93[JPT][hapmap]
rs11590106	0.93[JPT][hapmap]
rs11801110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12129041	0.87[JPT][hapmap]
rs12239887	0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12751633	0.93[JPT][hapmap]
rs12755096	0.93[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12760863	0.93[JPT][hapmap]
rs17112857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2391390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs34726676	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34850224	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34923964	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35578830	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3890785	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4131811	0.93[JPT][hapmap]
rs4300274	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4387224	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4540701	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4615892	0.98[ASN][1000 genomes]
rs55902261	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55911502	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60846886	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6662345	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6674467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6674604	0.93[JPT][hapmap]
rs6678809	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6679106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684137	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6689195	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6704022	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs71654403	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs71654404	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71654405	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71654406	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71654407	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71654408	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7417186	0.98[ASN][1000 genomes]
rs7540821	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95539000-95541600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:95539200-95541000	Weak transcription	A549	lung
3	chr1:95539200-95541600	Weak transcription	Colonic Mucosa	Colon
4	chr1:95539400-95539800	Active TSS	Liver	Liver
5	chr1:95539400-95539800	Enhancers	Stomach Smooth Muscle	stomach
6	chr1:95539400-95539800	Enhancers	K562	blood
7	chr1:95539400-95541000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:95539400-95542000	Enhancers	HepG2	liver
9	chr1:95539600-95539800	Enhancers	Dnd41	blood
10	chr1:95539600-95540600	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links