Variant report

Variant	rs12239887
Chromosome Location	chr1:95540483-95540484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95539591..95541319-chr1:95541795..95543723,2	K562	blood:
2	chr1:95539210..95541346-chr1:95694929..95697807,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10465759	0.94[ASN][1000 genomes]
rs11801110	0.91[ASN][1000 genomes]
rs12755096	0.81[AFR][1000 genomes]
rs17112857	0.89[ASN][1000 genomes]
rs2391390	0.86[ASN][1000 genomes]
rs34726676	0.94[ASN][1000 genomes]
rs34850224	0.91[ASN][1000 genomes]
rs34923964	0.97[ASN][1000 genomes]
rs35578830	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3890785	0.94[ASN][1000 genomes]
rs4300274	0.97[ASN][1000 genomes]
rs4387224	0.97[ASN][1000 genomes]
rs4540701	0.97[ASN][1000 genomes]
rs4615892	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs55902261	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55911502	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60846886	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6662345	0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6672635	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6674467	0.94[ASN][1000 genomes]
rs6678809	0.97[ASN][1000 genomes]
rs6679106	0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6684137	0.97[ASN][1000 genomes]
rs6687351	0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6689195	0.87[ASN][1000 genomes]
rs6704022	0.88[ASN][1000 genomes]
rs71654403	0.94[ASN][1000 genomes]
rs71654404	0.91[ASN][1000 genomes]
rs71654405	0.97[ASN][1000 genomes]
rs71654406	0.97[ASN][1000 genomes]
rs71654407	0.97[ASN][1000 genomes]
rs71654408	0.94[ASN][1000 genomes]
rs7417186	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95539000-95541600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:95539200-95541000	Weak transcription	A549	lung
3	chr1:95539200-95541600	Weak transcription	Colonic Mucosa	Colon
4	chr1:95539400-95541000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:95539400-95542000	Enhancers	HepG2	liver
6	chr1:95539600-95540600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:95539800-95549000	Weak transcription	K562	blood

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